| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3690 |
|---|
| Symbol | |
|---|
| ID | 5871483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4105030 |
|---|
| End bp | 4105692 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641548813 |
|---|
| Product | YhhN family protein |
|---|
| Protein accession | YP_001669917 |
|---|
| Protein GI | 167034686 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3714] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.480296 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCGTC CAAGCCACCT GATGATTCTC GCCCTGGCCG CCACTGCCCT CTATCTATAT
GCACTGGCCA GTAACAATAC CCTGCTCGCC CTGCTGGCCA AGCCCGTTCC CGCCCTGGCG
CTTATCGCCT GGCTGCGCGG CGCCCCCGCC ACACCGTATG GCAAGTGGAT ATCGATAGGC
CTGGGTTTCT CGGTCATCGG CGACATACTG CTGGCTGTCC CCGCTGACCT GTTCGTGTTC
GGCCTGGCCG CCTTCCTCTG TGCCCACCTG GCCTACCTGC GCGCCTATTG CGGCGTTACC
CTGCGCCCTG CCCTGCCCGC ACTGATAGCC AGCGCCATCA CCGGCATCGT GCTGCTCGGC
GTACTTGCCA GCCACGGCCT CGGCCCACTG CTGATCCCGG TCGCACTGTA TGCCCTGGCC
ATCAGCGCCA TGCTCTGGCG CGCCTTGGCA TGTGGTGGAA TGGCCGCGCT GGGGGCCTGC
CTGTTCGTGC TCTCCGACAG CCTGATCGGC ATCGACCGCT TCGTCAGCCC GTTCGCCGCC
ACGCCCTACC TGATCATCCT CACCTACTGG CTCGGTCAGT GGGCGATTGC TTCATCAGCC
AGTCATCGCT CAAACGATAA AGTATTGACC CAGAGCGGTG CGCACGACGC CAGCAGCTGC
TAG
|
|---|
| Protein sequence | MPRPSHLMIL ALAATALYLY ALASNNTLLA LLAKPVPALA LIAWLRGAPA TPYGKWISIG
LGFSVIGDIL LAVPADLFVF GLAAFLCAHL AYLRAYCGVT LRPALPALIA SAITGIVLLG
VLASHGLGPL LIPVALYALA ISAMLWRALA CGGMAALGAC LFVLSDSLIG IDRFVSPFAA
TPYLIILTYW LGQWAIASSA SHRSNDKVLT QSGAHDASSC
|
|---|
| |