Gene PputGB1_3687 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_3687 
Symbol 
ID5871480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp4102282 
End bp4103607 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content62% 
IMG OID641548810 
Productisocitrate lyase 
Protein accessionYP_001669914 
Protein GI167034683 
COG category[C] Energy production and conversion 
COG ID[COG2224] Isocitrate lyase 
TIGRFAM ID[TIGR01346] isocitrate lyase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.978448 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.141916 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACTGA CACGCGAACA GCAAATTGCA GCCCTCGAGA AAGACTGGGC CGAGAACCCG 
CGCTGGAAAG GCGTGACCCG TACCTACACC GCCGCTGATG TCGTTCGCCT GCGTGGCTCC
CTGCAGCCAG AGCACACCCT GGCCCGTCAG GGTGCAGAAA AACTGTGGAA GCTGGTCACC
CAAGGTGCCC ACCCATCCTT CCGCCCAGAA AAAGATTTCG TCAACTGCAT GGGCGCCCTG
ACCGGTGGCC AGGCAGTGCA GCAGGTCAAG GCCGGCATCC AGGCCATCTA CCTGTCCGGC
TGGCAGGTTG CCGCCGACAA CAACTCGGCC GAGTCGATGT ACCCTGACCA GTCGTTGTAC
CCGGTCGACT CGGTACCGAC CGTGGTCAAG CGCATCAACA ACTCGTTCCG CCGCGCCGAC
CAGATCCAGT GGAAAGCCGG CAAGAACCCA GGCGACGAAG GCTACATCGA CTACTTCGCA
CCAATCGTGG CCGACGCTGA AGCCGGTTTC GGCGGCGTAC TGAACGCCTA CGAGCTGATG
AAGAACATGA TCGAAGCAGG CGCCGCCGGC GTGCACTTCG AAGACCAGCT GGCCTCGGTG
AAAAAATGCG GCCACATGGG CGGCAAGGTA CTGGTACCCA CCCAGGAAGC CGTACAGAAG
CTGGTGGCCG CGCGCCTGGC AGCTGACGTG TCGGGCGTAC CGACCATCAT CCTGGCCCGC
ACCGACGCCA ACGCCGCCGA CCTGCTGACC AGCGACTGCG ACCCCTACGA CCAGCCGTTC
GTGATTGGCG AGCGTACCCG TGAAGGCTTC TACAAGGTAC GTGCCGGCCT CGACCAGGCA
ATTTCCCGCG GCCTGGCCTA CGCGCCGTAC GCCGACCTGA TCTGGTGTGA AACCGCCAAG
CCGGACCTGG ACGAAGCCCG CCGCTTCGCC GAAGCGATCA AGAAGGAATA CCCGGACCAG
ATCCTGTCGT ACAACTGCTC GCCGTCCTTC AACTGGAAGA AGAACCTGGA CGATGCCACC
ATCGCCAAAT TCCAGCGCGA GCTGTCGGCC ATGGGCTACA AACACCAGTT CATCACCCTG
GCTGGCATCC ACAACATGTG GCACGGCATG TTCAACCTGG CGCACGACTA CGCCCGCAAC
GACATGACCG CCTACGTGAA ACTGCAAGAG CAGGAGTTCG CTGACGCCAG CAAAGGCTAC
ACCTTCGTGG CGCACCAGCA GGAAGTGGGC ACCGGCTACT TCGACGACAT GACCACCGTG
ATCCAGGGTG GCGCATCGTC GGTGACTGCA CTGACCGGCT CCACCGAGGA AGAGCAGTTC
CACTGA
 
Protein sequence
MALTREQQIA ALEKDWAENP RWKGVTRTYT AADVVRLRGS LQPEHTLARQ GAEKLWKLVT 
QGAHPSFRPE KDFVNCMGAL TGGQAVQQVK AGIQAIYLSG WQVAADNNSA ESMYPDQSLY
PVDSVPTVVK RINNSFRRAD QIQWKAGKNP GDEGYIDYFA PIVADAEAGF GGVLNAYELM
KNMIEAGAAG VHFEDQLASV KKCGHMGGKV LVPTQEAVQK LVAARLAADV SGVPTIILAR
TDANAADLLT SDCDPYDQPF VIGERTREGF YKVRAGLDQA ISRGLAYAPY ADLIWCETAK
PDLDEARRFA EAIKKEYPDQ ILSYNCSPSF NWKKNLDDAT IAKFQRELSA MGYKHQFITL
AGIHNMWHGM FNLAHDYARN DMTAYVKLQE QEFADASKGY TFVAHQQEVG TGYFDDMTTV
IQGGASSVTA LTGSTEEEQF H