| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3679 |
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| Symbol | |
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| ID | 5871472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4092325 |
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| End bp | 4093707 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641548802 |
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| Product | amino acid permease-associated region |
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| Protein accession | YP_001669906 |
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| Protein GI | 167034675 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.720671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00000622895 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTTCGC AAGACAACAA GAAACAGCGT TCCCTGCAAC ACGGCCTGAC CTCCCGTCAG
GTGTCCATGA TCTCCATCGC CGGCATCATC GGCGCCGGCC TGTTCATCGG TTCTTCCAAC
GCCATCGCCA CCGCCGGCCC GGCCATCCTC ATTTCCTACG CCATGACCGG CTTGCTGGTC
CTGCTGGTGA TGCGCATGCT CGGCGAAATG GCCATCGCCA ACCCCAACAG CGGCTCGTTC
TCCACCTATG CCTCGGAGGC CATCGGCCCT TGGGCGGGCT TTACCATCGG CTGGTTGTAC
TGGTGGTTCT GGGTACTGAT CATTCCGGTG GAAGCCATTG CCGGCGCTGA CATCCTGCAC
GCCTACTTCC CTGGCGTGCC GTCCTGGCTG TTCGCCTTCC TGATCATGCT GGTGCTGTCG
GGTACCAACC TGGTCAGCGT GAAGAACTTC GGTGCCTTCG AGTACTGGTT CGCGCTGGTC
AAGGTGGTAG CGATCATCGG CTTCATCGGG GTGTGCACCT TGGCGGTGTT CGGCTTCTGG
CCGCTGGCTG AAGTCTCTGG AGTCAGCCGG CTGTGGGACA ACGGTGGTTT CATGCCCAAT
GGCTTCGGGA CGGTGTTGGG GGGCGTACTG ATCACCATCT TCTCGTTCTT CGGTGCCGAA
ATTGTCACCA TCGCGGCTGA CGAAACCGCC AACCCGAAAG ACAAGATCCG CCGCGCCACC
AACCTGGTGG TGTATCGCAT CGCCATCTTC TACCTGGCGT CGATCTTCCT GGTGGTGTCC
CTGGTGGCCT GGAACGACCC AGCGCTCAAA GCAGTCGGCT CGTTCCAGCG CGTGCTGGAA
GTGCTGAACG TGCCGGGCGC CAAGCTGCTG GTCGATCTGG TGGTACTGGT GGCGGTGACC
AGTTGCATGA ACTCGGGGCT GTACACCGCG TCGCGCATGC TCTACTCGCT GGGTGCTCGT
GGTCAGGCGC TGAGCGTGAC CAAGCGCATT TCCGGTTCCG GCGTGCCGAC AGTGGCGGTG
ATCTTCTCTA CCCTGGCAGG CTTTGCCGGC TGCCTGGTCA ACTATGTGTT CCCTGGCAAG
GTGTTCGGCT TCCTGTTGTC CACCACGGGG GCCATCGCCC TGCTGGTGTA CCTGGTGATT
GCCGTATCGC AGCTGCGTAT GCGTGCCCGT GCCGAACGTG AAGGGCGCCC GCTCGAGCTG
AAGATGTGGC TGTTCCCGTG GCTGACCTGG CTGGTGATCG GCACCATCGT CATGGTGCTG
GGCTACATGC TGTTCAGCGA TGCCTACCGC TATGAAACGC TGATGACTGC GGGGGTGACC
GCGTTCATCC TGCTGGTTTC GCTGACCCAG CGGCGTGCCA ATGTGGTTGC CCAGACGGCC
TGA
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| Protein sequence | MASQDNKKQR SLQHGLTSRQ VSMISIAGII GAGLFIGSSN AIATAGPAIL ISYAMTGLLV
LLVMRMLGEM AIANPNSGSF STYASEAIGP WAGFTIGWLY WWFWVLIIPV EAIAGADILH
AYFPGVPSWL FAFLIMLVLS GTNLVSVKNF GAFEYWFALV KVVAIIGFIG VCTLAVFGFW
PLAEVSGVSR LWDNGGFMPN GFGTVLGGVL ITIFSFFGAE IVTIAADETA NPKDKIRRAT
NLVVYRIAIF YLASIFLVVS LVAWNDPALK AVGSFQRVLE VLNVPGAKLL VDLVVLVAVT
SCMNSGLYTA SRMLYSLGAR GQALSVTKRI SGSGVPTVAV IFSTLAGFAG CLVNYVFPGK
VFGFLLSTTG AIALLVYLVI AVSQLRMRAR AEREGRPLEL KMWLFPWLTW LVIGTIVMVL
GYMLFSDAYR YETLMTAGVT AFILLVSLTQ RRANVVAQTA
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