| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3659 |
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| Symbol | |
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| ID | 5871451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4071057 |
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| End bp | 4073075 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641548781 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001669886 |
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| Protein GI | 167034655 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0914458 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00000417514 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCACGTA ACGAGCCCTT TGAAAACGTG CCCACGGCGA ACGATCACCC GGACCAGGCC
ATCAGCCTAT CCCAGGCGTT GCTGGCGCCA CGCATCGTGA TCGAAGACAC CCAACCGGTG
CTCGAAGCCG GCACCTTCGC CGCCAAGGCC ATCAGTGGCC AGCCGGTGGT CGTCGGCAGC
AAGGTCTATT GCGATGGCCA CGACCGCCTG GCGGTGATGC TCAACTGGCG CCAGGCCAAC
AGCCGCCGCT GGCATTGCGT GCCCATGCAC TCGCCGGGCA ACGACCTGTG GTTGGCCGAG
TTCACCCCCA CCGAACTTGG CCCGCACCTG TTCAGTATCG AGGCCTGGAT CGACCCGTTT
GCCACTTATT GCCACGACCT GGAGAAAAAA TACCACGCCG GCGTCGAGGT GAAACTGGAG
CTGGAAGAGG GCCGTTTGCT GCTGAGCAAA GGCCTCGAAC TGTGCAGCGG CGCCCTGCAC
GAGGAACTTG AGGCCGTGCA GCAGCGCCTG GCTACACTCG GTCCCGACGA CCAGGTGGCG
TTGTTTCTCG ACCCAACCAC CGCCCGCCTG ATGAGCGAAG CCGAACACCG CAGTTACCTG
GCCCGCAGCC GTGAATTTCC GGTCGATGTC GACCGCCCGG CGGCGCAATT TGCCAGCTGG
TACGAACTGT TCCCGCGTTC GATCACCGAC GACCCGCAGC GCCACGGCAC CTTCAACGAC
GTGCACGAAC GCCTGCCGAT GATTCGCGAC ATGGGCTTCG ACGTGTTGTA CTTCCCGCCC
ATCCACCCCA TCGGCATGCA GCACCGCAAG GGCCGCAACA ATGCCCTGCA TGCCGAACCT
GGCGACCCCG GCAGCCCTTA CGCGATCGGC AGCGCCGAAG GCGGCCACGA TGCGATCCAC
CCGCAACTGG GCAGTCGCGA AGATTTTCGC CGGTTGGTCG CCGCTGCGGC GGAGCACGGC
CTGGAAATCG CCCTCGACTT CGCCATCCAG TGTTCGCAGG ACCACCCCTG GCTCAAGGAG
CATCCGGGCT GGTTCAGCTG GCGCCCCGAC GGCACCATCC GCTATGCCGA AAACCCGCCG
AAGAAGTACC AGGACATCGT CAACGTCGAC TTCTATGCCC CCGACGCGGT GCCGAGTTTG
TGGCTGGCCC TGCGCGATGT GATCATCGGC TGGGTCGAGG AGGGGGTCAA AACCTTTCGC
GTCGACAACC CGCACACCAA GCCACTGCCG TTCTGGCAAT GGCTGATCGC CGATGTGCGT
AGCCAGCACC CCGACGTCAT CTTCCTCGCC GAAGCGTTTA CCCGGCCGGC GATGATGGCG
CGCCTGGGCA AGGTCGGCTA CGCGCAAAGC TATACCTACT TCACCTGGCG CAACACCAAG
CAGGAGCTGC GTGAATTCTA CGAGCAGCTC AACCAGCCGC CGTGGAGCCA GTGCTATCGC
CCCAACTTCT TCGTCAACAC ACCGGACATC AACCCGTACT TCCTGCACAC CTCTGGACGC
GCCGGCTTCC TCATTCGCGC GGCGCTGGCG ACCATGGGCT CGGGCCTATG GGGTATGTAC
TCGGGTTTCG AGCTGTGCGA AGGCACGCCG CTGCCTGGCA AGGAGGAGTA CCTGGATTCG
GAGAAGTACG AAATTCGCCC GCGTGATTTC ACCCAGCCCG GCAACATCAT TGCCGAGATC
GCCCAGCTCA ACCGCATCCG CCGGCAGAAC CGTGCTTTGC AAACGCATCT GGGCGTGGCG
TTTTTCAACT GCTGGAACGA CAACATCCTG TACTTCGCCA AGCGCACGGC CGAGCGCGAC
AACTACATCC TGGTGGCGAT CAGCCTCGAC CCGCACAACG CCCAGGAAGC GCACTTCGAG
CTGCCGCTGT GGGAGCTTGG TTTGGATGAC AACGCCGAAA CCCATGGCGA AGACCTGATG
AACGGCCATC GGTGGTCGTG GTACGGCAAG ACCCAGTTCA TGCGCATCGA GCCTTGGCAC
CAGCCATTCG GAATCTGGCG TATCGAAAAG GCTAGGTGA
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| Protein sequence | MSRNEPFENV PTANDHPDQA ISLSQALLAP RIVIEDTQPV LEAGTFAAKA ISGQPVVVGS
KVYCDGHDRL AVMLNWRQAN SRRWHCVPMH SPGNDLWLAE FTPTELGPHL FSIEAWIDPF
ATYCHDLEKK YHAGVEVKLE LEEGRLLLSK GLELCSGALH EELEAVQQRL ATLGPDDQVA
LFLDPTTARL MSEAEHRSYL ARSREFPVDV DRPAAQFASW YELFPRSITD DPQRHGTFND
VHERLPMIRD MGFDVLYFPP IHPIGMQHRK GRNNALHAEP GDPGSPYAIG SAEGGHDAIH
PQLGSREDFR RLVAAAAEHG LEIALDFAIQ CSQDHPWLKE HPGWFSWRPD GTIRYAENPP
KKYQDIVNVD FYAPDAVPSL WLALRDVIIG WVEEGVKTFR VDNPHTKPLP FWQWLIADVR
SQHPDVIFLA EAFTRPAMMA RLGKVGYAQS YTYFTWRNTK QELREFYEQL NQPPWSQCYR
PNFFVNTPDI NPYFLHTSGR AGFLIRAALA TMGSGLWGMY SGFELCEGTP LPGKEEYLDS
EKYEIRPRDF TQPGNIIAEI AQLNRIRRQN RALQTHLGVA FFNCWNDNIL YFAKRTAERD
NYILVAISLD PHNAQEAHFE LPLWELGLDD NAETHGEDLM NGHRWSWYGK TQFMRIEPWH
QPFGIWRIEK AR
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