| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3654 |
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| Symbol | |
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| ID | 5871446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4060940 |
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| End bp | 4063093 |
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| Gene Length | 2154 bp |
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| Protein Length | 717 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641548776 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_001669881 |
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| Protein GI | 167034650 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0348768 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCCC GCACCCCAAA GAAAACCCGC TCGGTCGCAC CGTCGCGCAT CCGCGAAGGC
ATGCCCTTTC CCCTCGGTGC CACCTGGGAT GGCCTTGGGG TTAACTTCGC CCTGTTCTCG
GCCAACGCCA CCAAGGTCGA ACTGTGCCTG TTCGATTCCA CCGGCGAACA GGAAATCGAG
CGCATCGAGC TGCCCGAATA CACCGACGAG ATCTACCACG GCTACCTGCC CGACGCTCAC
CCTGGCCTGG TCTATGGCTA CCGGGTATAC GGCCCGTACG AGCCGGAAAA CGGCCACCGC
TTCAACCCCA ACAAACTGCT GATCGACCCC TATGCCAAGC AACTGGTCGG CAGCCTGAAA
TGGTCCGAAG CGCTGTTTGG CTACACCATC GGCCACCCCG ATGGCGACCT GTCGTTCGAC
GAGCGCGACA GTGCGCCCTT CGTCCCCAAG TGCAAGGTGA TCGACCCGGC CTTCACCTGG
GGCCGCGACC AACGCGTGCT GATCCCCTGG GAACGCACGA TCATCTACGA GGCGCACACC
CGTGGCATCA GCATGCGCCA CCCGGCGGTA CCGGAAGCGC TGCGCGGCAC TTTTGCCGGC
CTGGCCAATG ACGAACTGCT CAAGCACATC AAGGACCTGG GCGTCTCCAG CATCGAGCTG
CTGCCGATTC ACGCCTTCGT CAACGACCAA CACCTGCTGG ACAAAGGCCT GAACAACTAC
TGGGGCTACA ACAGCATCGC CTTTTTCGCC CCGCACCCGC GCTACCTGGC CAGCGGCAAG
ATTGCCGAGT TCAAGGAAAT GGTCGCCCAC CTGCACGACG CCGGGCTCGA GGTGATCCTG
GACGTGGTCT ACAACCACAC CGCCGAAGGC AACGAGCGCG GCCCGACCCT GTCGATGCGC
GGTATCGACA ACGCCTCGTA CTACCGCCTG ATGCCGGACG ACAAGCGCTA CTACATCAAC
GATTCCGGCA CCGGCAACAC CCTGGACCTG AGCCACCCCT GCGTGCTGCA GCTGGTCACC
GATTCGCTGC GTTACTGGGC GGGTGAAATG CACGTTGACG GCTTCCGCTT CGACCTGGCG
ACCATCCTTG GCCGCTACCA CGACGGCTAC AGCGAGCGTC ATGGCTTCCT CGTCGCCTGC
CGCCAGGACC CGATGCTGAG CCAGGTCAAG CTGATTGCCG AGCCCTGGGA CTGCGGCCCC
GGCGGCTATC AGGTGGGTAA CTTTGCCCCT GGCTGGGCGG AATGGAACGA CCGCTTCCGC
GACACCGCAC GCGCCTTCTG GAAAGGCGAT GAAGGCCAAC TCGCCGATTT TGCCGCACGC
TTGACCGCCT CGGGCGACAT GTTCAACAAC CGTGGGCGGC GGCCGTATTC CTCGGTCAAC
TTCATCACCG CCCACGATGG TTTCACCCTG CGCGACCTGG TGTCGTACAA CCACAAGCAC
AACGAAGACA ACGACGAGAA CAACCAGGAC GGCACCGACA ACAACCTGTC GTGGAACTGC
GGCGTCGAAG GGCCGACCGA CGACCCGGGG ATCAATGCCC TGCGCATGCG CCAAATGCGC
AACTATTTCG CTACCCTGCT GCTGGCCCAG GGCACGCCGA TGATCGTCGC CGGTGACGAA
TTCAGCCGCA CCCAGCACGG CAACAACAAC GCCTACTGCC AGGACAGCGA GATCGGTTGG
GTGAACTGGG ACCTGGATCA GCAAGGCGAA GAGCTGCTGG CCTTCGTCAA GCGCCTGACC
CGTCTGCGCC TGGCCTACCC GGTGCTGCGC CGCTCACGTT TCCTGGTGGG CGATTACAAT
GAGGCGATCG GGGTCAAGGA TGTGACTTGG CTGGCGCCGG ATGGTAGCGA GATGACTGTG
GAGCAGTGGG AAGACCCGCA CGGGCGCTGC CTGGGCATGC TGATCGATGG CCGCGCACAG
GTCAGCGGCA TCGCCCGGCC GGGCGCCGAG GCCACGGTGC TGCTGATCGT CAATGCCCAC
CATGACATCG TGCCTTTCAA GTTGCCGTCC GTGCCTGAAG GCGAGTACTG GAGCTGCCTG
GTGGATACCG ACCGGCCAGA GTTACGCAAA GGGCAGCATT TGCAGTTCGA CAGCACGTTC
GAGGTCAAGG GGCGGTCGAT GCTGCTGATG GTGCTGCAGC GCGACGAGGA GTGA
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| Protein sequence | MSPRTPKKTR SVAPSRIREG MPFPLGATWD GLGVNFALFS ANATKVELCL FDSTGEQEIE
RIELPEYTDE IYHGYLPDAH PGLVYGYRVY GPYEPENGHR FNPNKLLIDP YAKQLVGSLK
WSEALFGYTI GHPDGDLSFD ERDSAPFVPK CKVIDPAFTW GRDQRVLIPW ERTIIYEAHT
RGISMRHPAV PEALRGTFAG LANDELLKHI KDLGVSSIEL LPIHAFVNDQ HLLDKGLNNY
WGYNSIAFFA PHPRYLASGK IAEFKEMVAH LHDAGLEVIL DVVYNHTAEG NERGPTLSMR
GIDNASYYRL MPDDKRYYIN DSGTGNTLDL SHPCVLQLVT DSLRYWAGEM HVDGFRFDLA
TILGRYHDGY SERHGFLVAC RQDPMLSQVK LIAEPWDCGP GGYQVGNFAP GWAEWNDRFR
DTARAFWKGD EGQLADFAAR LTASGDMFNN RGRRPYSSVN FITAHDGFTL RDLVSYNHKH
NEDNDENNQD GTDNNLSWNC GVEGPTDDPG INALRMRQMR NYFATLLLAQ GTPMIVAGDE
FSRTQHGNNN AYCQDSEIGW VNWDLDQQGE ELLAFVKRLT RLRLAYPVLR RSRFLVGDYN
EAIGVKDVTW LAPDGSEMTV EQWEDPHGRC LGMLIDGRAQ VSGIARPGAE ATVLLIVNAH
HDIVPFKLPS VPEGEYWSCL VDTDRPELRK GQHLQFDSTF EVKGRSMLLM VLQRDEE
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