| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3647 |
|---|
| Symbol | |
|---|
| ID | 5871439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4050463 |
|---|
| End bp | 4051446 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641548769 |
|---|
| Product | 6-phosphogluconate dehydrogenase-like protein |
|---|
| Protein accession | YP_001669874 |
|---|
| Protein GI | 167034643 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1023] Predicted 6-phosphogluconate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00872] 6-phosphogluconate dehydrogenase (decarboxylating)
[TIGR00873] 6-phosphogluconate dehydrogenase, decarboxylating |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.668107 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.648492 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTGG GAATCGTCGG GCTGGGCCGC ATGGGCGGCA ACATCGCAAG GCGCCTGATG
CGCGCCGGCC ATCGCACCGT GGTACACGAC CGCAACCGTG AAGCCATCAC TGGGCTGGAG
GGCGAGGGCG CCCAGGGCGC GCACGACCTC GGTGCACTGG TACAAAAGCT GAAAGCGCCG
CGTGCCGTAT GGGTGATGCT GCCGGCCGGC GAGCCCACCG AGCAAACCAT CGCCCAATTG
GCCGAGCTGC TGGAGCCGGG CGATGCGATC ATCGACGGCG GCAACACCTT CTACAAGGAC
GACATGCGCC GCGCCGCAGA ACTGGCCAAG CGCGGCCTGC ATTACCTGGA CGTCGGTACC
TCCGGCGGCG TATGGGGCCT GGACCGTGGC TACTGCATGA TGATCGGTGG CGAAAAGGAC
GTGTTCGAGC GCCTGGAGCC CCTGTTCAAG GCGCTGGCGC CAGGCGTGGG TGACATCCCG
CGTACCCATG GCCGCAGCGG CGAGCACCAG CGGGCCGAAC ACGGCTATAT CCACGCCGGC
CCACCTGGCG CCGGGCACTA CGTGAAAATG GTGCACAACG GTATCGAGTA CGGCTTGATG
CAGGCTTATG CCGAAGGCTT CGACCTGCTG CGCAGCAAAG GCGGCGACGA GCTGCCGGAA
GACCAGCGCT TTGACCTGAA CGTGGCCGAA ATCGCCGAAG TGTGGCGGCG CGGCAGCGTG
GTGACCTCGT GGCTGCTCGA CCTTACCGCC GATGCGCTGG TGGCCGACCC GCAGCTGTCG
CAGTTCAGTG GCTCGGTGTC CGACAGTGGC GAAGGCCGCT GGACCATCGA CGCTGCGGTC
GAGCAGGCGG TGCCGGTGCC GGTGTTGTCC AGCGCATTGT TCGCGCGCTT CCGCTCGCGC
CAGCAGCAGG GTACTTATGG TGACAAGATT CTCTCGGCCA TGCGCCTGGG CTTCGGTGGC
CACGTCGAGA AGAAAGCCGA ATGA
|
|---|
| Protein sequence | MQLGIVGLGR MGGNIARRLM RAGHRTVVHD RNREAITGLE GEGAQGAHDL GALVQKLKAP
RAVWVMLPAG EPTEQTIAQL AELLEPGDAI IDGGNTFYKD DMRRAAELAK RGLHYLDVGT
SGGVWGLDRG YCMMIGGEKD VFERLEPLFK ALAPGVGDIP RTHGRSGEHQ RAEHGYIHAG
PPGAGHYVKM VHNGIEYGLM QAYAEGFDLL RSKGGDELPE DQRFDLNVAE IAEVWRRGSV
VTSWLLDLTA DALVADPQLS QFSGSVSDSG EGRWTIDAAV EQAVPVPVLS SALFARFRSR
QQQGTYGDKI LSAMRLGFGG HVEKKAE
|
|---|
| |