| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3625 |
|---|
| Symbol | |
|---|
| ID | 5871417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4027892 |
|---|
| End bp | 4029181 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641548747 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001669852 |
|---|
| Protein GI | 167034621 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.301202 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAAC AGTCCGCTCA GCACGTCGCC AGCTACTACG CCCAGACCTA CCCCGCCAAC
ATCCCATTAC GCCCTACCCT GCAAGGCACC CACGACACCG ACGTACTCAT CATCGGCGCC
GGCTTCAGCG GCCTGCACAC TGCCCTGCGC CTGACTCAGG CCGGCAAGCG CGTCACATTG
CTGGAAGCCA GCCGGGTTGT CTGGGCTGCC TCCGGGCGCA ACGGGGGCCA GGCGCTGTTG
GGTTGGTCGT GCGACATGCC GCCGCTGGAA AAAGCCCTGG GCATCGAACG TACCCAACGG
TTGTGGGCCA GCATGTGCTG GGCCGCCGAC GAAATGCGCG AACTGCCCCA GCGCCACGGC
TTCGATATCG ACTACCGGCT GGGCAGCCTG TGGACTGCTG TCATGCCGCG CCGAGTGAAA
ATACTTGAAG AAGCCCTGCA CGAGGCCGAA CACAAGTGGG GCTACGACGC CCTGCGCCTG
ATCGGCCGTG ACGAGCTGCC GCAATGGGTC GACAGCCCGC GCTACCAGGC CGCGCTGTAC
GACGCCAAAG GTGCACACCT CAACCCGCTG AAACTGGCGC AAGGCCTGGC CAGCACCCTC
GAGGCTGCTG GCGGGCGCAT CTACGAGCAA AGCCAGGTGC TCAGTTACCA GCAGGCTGGC
GACGGCTTTG TCGCCCGTAC CGACCACGGC GAAGTACGCG CCCAGGTGTT GGTGCTGGCC
TGCAACGCCT ACATCGACCG CCTCGATCGT GGTCTGTCGA GGCGCCTGTT GCCCGTTGGC
TCCTACCAGG TAGCTACCGC GCCGCTGGAC GCCGACTTGG CCCGTTCGCT GCTGCCGCGC
AACAGCTGCG TGATCGACAA CCAGTTCGTG CCCGACTACT TCCGCCTCAC CCCAGACCAC
CGGCTGCTGT TCGGCGGTGG CTGCACTTAT CTGGGGGGCA TTCCCAAGGA CGTCGCCAGC
GCCACCCGCC CCTACCTGGA GCGGGTGTTC CCGCAACTGG CCGGGGTAGC CATCGACTAT
GCCTGGGGCG GCCATATCGA CTGCAGCATC CAGCGCACCC CGGACGTCGG CCGCGAAGGC
CAGCGCTACT GGCTGCAGGG CTTCTCCGGC CACGGCGTGC TGCCGACCCT GGCTGCAGCA
CGGGCCGTGA GCGACGCCAT CCTCGGTGAC GACGACCTGC TGACGCTGTA CCAAGGCATC
GACAACGGCC GGTTCCCCGG CGGCGATCTG CTGGCAGCAC CACTGGAAGC TGCCGCCAAG
GCGTGGTACA GAATGCGCGA TCGCGTCTGA
|
|---|
| Protein sequence | MFKQSAQHVA SYYAQTYPAN IPLRPTLQGT HDTDVLIIGA GFSGLHTALR LTQAGKRVTL
LEASRVVWAA SGRNGGQALL GWSCDMPPLE KALGIERTQR LWASMCWAAD EMRELPQRHG
FDIDYRLGSL WTAVMPRRVK ILEEALHEAE HKWGYDALRL IGRDELPQWV DSPRYQAALY
DAKGAHLNPL KLAQGLASTL EAAGGRIYEQ SQVLSYQQAG DGFVARTDHG EVRAQVLVLA
CNAYIDRLDR GLSRRLLPVG SYQVATAPLD ADLARSLLPR NSCVIDNQFV PDYFRLTPDH
RLLFGGGCTY LGGIPKDVAS ATRPYLERVF PQLAGVAIDY AWGGHIDCSI QRTPDVGREG
QRYWLQGFSG HGVLPTLAAA RAVSDAILGD DDLLTLYQGI DNGRFPGGDL LAAPLEAAAK
AWYRMRDRV
|
|---|
| |