Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3615 |
Symbol | |
ID | 5871407 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 4015767 |
End bp | 4016021 |
Gene Length | 255 bp |
Protein Length | 84 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641548737 |
Product | cold-shock DNA-binding domain-containing protein |
Protein accession | YP_001669842 |
Protein GI | 167034611 |
COG category | [K] Transcription |
COG ID | [COG1278] Cold shock proteins |
TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.00635954 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAGCG GTAAAGTCAA GTGGTTCAAC AATGCCAAGG GCTATGGATT CATCAATGAG GACGGCGGAA CCGAAGATCT GTTCGCACAC TATTCGGCGA TCCAGATGGA CGGTTACAAG ACGCTGAAAG CCGGACAAGC TGTGACGTTC AACATCATCC AGGGCCCGAA AGGCCTGCAT GCGGTTGAAA TCAAGGGCAT CAACGTCAGC GCTTCAACGG GAGTACCGAA CTCGCCCACG ACCGCTAATG CGTGA
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Protein sequence | MASGKVKWFN NAKGYGFINE DGGTEDLFAH YSAIQMDGYK TLKAGQAVTF NIIQGPKGLH AVEIKGINVS ASTGVPNSPT TANA
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