| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3590 |
|---|
| Symbol | |
|---|
| ID | 5871381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3992080 |
|---|
| End bp | 3993297 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641548711 |
|---|
| Product | cytosine deaminase |
|---|
| Protein accession | YP_001669817 |
|---|
| Protein GI | 167034586 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.682581 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.610858 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACC GTGAGTTCAT CAATGCCATC GACGCCGATG GCCTGCCCCT GCACATCGCC
GTAAGCAACG GCCGCATCAG CCACATCGGC CCGCAACGCG CCAGCACACC CGCCCGCGAG
ACCATCGACC TTGAAGGCCT GCTGGCGCTC CCCGGCTTCG TCGACGGCCA CATCCACTTG
GACAAAAGCT TCGTCGGCGA CCGCTGGCGC CCACACCAAC CCGTCGCCAG CCTGCGTGAG
CGCCTGGCCG TTGAAAAACG CGAACTTGCC AGCGCCCCAC CGATCCTCGA GCGCGCCGAC
GCGCTGATGC GCCAGGCCGC CTCTTACGGC ACCGTGGCCA TGCGCTGCCA TGTGGACGTG
GACGCCACCA CCGGCCTGAC CAACTTGCGC GCCATGCTCG AAGCCCGGGA CACCTGGAAA
GACCTGATAG ACATCGAACT TGTGGCCTTC CCCCAGGCCG GTGTGGTGAC CTGCCCCGGC
ACTGCCGACG TGATGGAAGC GGCTATACGC GAAGGTGTGC AGGTCGTCGG CGGTATCGAC
CCAACCACCC TGGATGGCGA CGCCGAAGCG CAGCTGGACA TCGTGTTCGG CATTGCCGAC
CGGCACGGCG TGAAGGTCGA TATCCACCTG CATGAACCCG GCGACATCTG CATCGCCCAG
CTTGAACGCA TCGCCGCGCG CACCACCGCC TTGGGCATGC AAGGCTTGGT GGCAGTCAGC
CACGCCTATG GCCTGGGCGA TGTATCCGAC GCGGTGGTCG ACCGCACGGC CGAGCTGCTG
GCCGGCGCCG GCGTATCGAT CATGACCAAC GCACCCGGCG AACACGCCTT CCCGCCTGTG
CTACGCCTGC GTGCAGGCGG TGTGCGGGTG TTCACCGGTA ACGACAATAT CCAGGATGCC
TGGTGGCCGT ATGGCAATGG CGACATGCTG CAACGGGCGA TGCTGATCAG CTATCGCTCG
GGCTTCAACA CCGACGAAGA ATTGCGGGTT GCGTTGGAAA TGGCCACCGA GGCCAGCGCC
GGAGTGATGG GCAAACAAGA CTACGGTTTG AAGGTCGGCA ACGAGGCCAG TTTCGTGCTG
TTAAAGGCGC CGAATGCGGC GGCGGCGGTG GCGGCAGCCC TCCATGAACG CGTGATCGTG
CGCCACGGCG CATTCTGGGG CGGGCCTGCG CAATTGCGGT TGAAGGCTAC GCAGTTTGCC
AACGAGCTGC GCCGTTGA
|
|---|
| Protein sequence | MNDREFINAI DADGLPLHIA VSNGRISHIG PQRASTPARE TIDLEGLLAL PGFVDGHIHL
DKSFVGDRWR PHQPVASLRE RLAVEKRELA SAPPILERAD ALMRQAASYG TVAMRCHVDV
DATTGLTNLR AMLEARDTWK DLIDIELVAF PQAGVVTCPG TADVMEAAIR EGVQVVGGID
PTTLDGDAEA QLDIVFGIAD RHGVKVDIHL HEPGDICIAQ LERIAARTTA LGMQGLVAVS
HAYGLGDVSD AVVDRTAELL AGAGVSIMTN APGEHAFPPV LRLRAGGVRV FTGNDNIQDA
WWPYGNGDML QRAMLISYRS GFNTDEELRV ALEMATEASA GVMGKQDYGL KVGNEASFVL
LKAPNAAAAV AAALHERVIV RHGAFWGGPA QLRLKATQFA NELRR
|
|---|
| |