| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3566 |
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| Symbol | |
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| ID | 5871357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3966491 |
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| End bp | 3967873 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641548687 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001669793 |
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| Protein GI | 167034562 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00000340192 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.133927 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTATG TCTTTCTGCT TTGCCTGACC TTTGCCCTTA CCCTGGGCGG CATCCTGGCA
CGCCCGATCG AATCGCTGTC GCTGTTCTGG CCGGTGAATG CGGTACTGGC CGGCGTACTG
CTGCGCTACC CCCGCCAAGC CACGTTTACC GGCTTCAGCC TGGTGTGGCT GGCCATGGTC
GGCGCCGACT TGCTGTGCGG CAGTGCCTGG GTGCCGGCCC TGTGGTTCAA CTTGTGCAAT
CTTGGCGTGG TGGTCACCCT CTGGCAGTTG CTTTCTCGCT TGCCACGGCT GCATCGGCGC
ATGCGCACCC CACACGGCGT GCTCAGCGTG TTCGCCGCCT GCGCCGCCGC CGCCATGGTG
GCAGCCAGCA TGGCAGCGGT AATGGCTGCC CCCTGGTTCG AACAGTCGTT GCGTGCCACC
TGGCTCGCCT GGTTCAGCGA ACAATTCTCG ACCAGCGTGC TGGTGCTGCC GGTAATGCTT
ACAGCGCCCT CGCTGCGTGC CCTGGTGCGT GGCGGTGCAC AGCCCATCCG TCTGGCACCG
TTGCTGGTGC TGTTGGCCTC GCTGGCGTTC AGCATCGCGT TTGGCGGGCC TGGGGCCATT
GCCTTCCCGA TTGCCGCGTT GCTGTGGTGT GCCTGGACCT ATTCACCGTT CCTGGTTTCA
CTACTGACGC TCACGGCCGG GAGCACACTG ATCGTAGCGG TGGCACAAAA CCTCATGCAC
TTCAGCGTGC CGCAGAGCGA ACCGGGGGTC ACCACGCTGA TGTCGGCTCG CCTTGGCATC
GCCATGCTGG TGCTAGGGCC GCTGGTGGTG GCCTGCGTCA GCCAGGCCAA CCGCAGCCTC
ATGGCCCGCC TGGCGCGCCA GGCCACCATC GATCACCTCA CCGGCGTGCT CACCCGCAGC
GCTTTCACCC GTCGTGCCAA CGCGCTGCTC GACAGCCGCC AGCAGCACGC CCAGGCGCTC
CCGCTGACCC TGATGATGCT GGACATCGAC CATTTCAAGT CGGTCAACGA TGCTCATGGC
CATGCGGTCG GTGACCAGGT GCTGCGCCAG TTCGCCGGCA CCCTGCAGGA TCAGTTGCAC
AACGACGAAC TGTTCGCGCG CCTGGGCGGT GAGGAATTCG CGGTCATCAT CCCCGGCCTT
GCGCCAGAGC GGGCCAAGTT CACCGCCGAA CGCCTGCGCC GCGCCGTGCA GGACCTGCAT
GTAATGCAGG CCGACCAACG CTTGCAGATT ACCGTGAGTA TCGGCCTGGC TGGCTGCGAT
GCCGACATGC CAGCCCCTAG CCTGGACGAA CTGCTGGCGA GTGCCGATCA GGCGCTGTAC
CGGGCCAAGG CCCACGGCCG CAACCGCGTC GAACAGGCCG AAGCACAGCG CCAGGTGGTC
TGA
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| Protein sequence | MPYVFLLCLT FALTLGGILA RPIESLSLFW PVNAVLAGVL LRYPRQATFT GFSLVWLAMV
GADLLCGSAW VPALWFNLCN LGVVVTLWQL LSRLPRLHRR MRTPHGVLSV FAACAAAAMV
AASMAAVMAA PWFEQSLRAT WLAWFSEQFS TSVLVLPVML TAPSLRALVR GGAQPIRLAP
LLVLLASLAF SIAFGGPGAI AFPIAALLWC AWTYSPFLVS LLTLTAGSTL IVAVAQNLMH
FSVPQSEPGV TTLMSARLGI AMLVLGPLVV ACVSQANRSL MARLARQATI DHLTGVLTRS
AFTRRANALL DSRQQHAQAL PLTLMMLDID HFKSVNDAHG HAVGDQVLRQ FAGTLQDQLH
NDELFARLGG EEFAVIIPGL APERAKFTAE RLRRAVQDLH VMQADQRLQI TVSIGLAGCD
ADMPAPSLDE LLASADQALY RAKAHGRNRV EQAEAQRQVV
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