| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3563 |
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| Symbol | |
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| ID | 5871354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 3962313 |
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| End bp | 3963473 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641548684 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001669790 |
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| Protein GI | 167034559 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.178663 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.195496 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCCC ACACCCCCAC GTTGTTCGCC GCCGTTGCCC TGGTGGCAAC CATCCTGGCC
TTCTGCTTGC TGCTGGTCGG GCGCAGCAAC CGCCGCGACA ACCTGATGCT GACTGGCTGC
GGGCTGCTGG TGCATGCCTT GGCTTATGTC TGCTACACCG TCTATGCCCA AGCCCCTTTG
TGGCTCAGCT ATGGCGTGGG CAACAGCCTG CTGTCGCTGG CCCTGGCGTT CTACACGGCC
AGCTTGTTCC GGGTGCGTGA GCAGGTAGTG CCCTGGCGTG TCATCTTCGT CATACCGGCC
TGCATGCTGG TGGGGCTGAT GCTGCTGCTC GATACGCTGG AACCGCGCAT GCTGCTGGCG
ACCCTGGTGC TGATGCTGCA GTGCGCGATG ATCTTGTATT GGGCGTGGCG TTATGCCGAG
CGGCCGGGCA GGGCCCATCT GTTGCTGGAG ATTGGCGCGT TGATCAGCCT GGTGGGCCTG
GGTATGCGTG TGGTGGCGGT GGCCAATGGC ACGGCGGTGG AAATGCGCTA TGACACCAGC
AACCTCAAAC AGAGCATTTC TGTGGCCATC GGCACCGCCA CGGTGATGAT GTACTCGATC
GGCTTGGTGC TCCTGGCCAA GGAGCGTAGC GAATCGCGCC TGCAGCACCT CGCTCTGCGT
GATGTGCTGA CCGGTACCTA CAATCGCCGG GCGATCCTCG AACGCTTCGG CGTCGAACTG
GACCGTGCAC GCGATCAGCA GGGCAGTCTG GCGGTGGCGA TGATCGACAT TGACCATTTC
AAACGCATCA ATGACCTGTA TGGGCATCTG GCTGGCGATG AGGTGTTATG CCACTGCGTG
CGCCAGTTGC AGCAGCGCCT GCGCCAGGGT GACAGCCTTG GTCGTTACGG CGGCGAAGAG
TTTCTGTTGC TGTTGCCCGG CACCGACCGC ACCGGTGCAA TGGCCGCCCT GCAAGGGCTG
CGCGAGGCCA TTGCGCGCAG CCCGGCGCGT TTTGCCGGTG ACCAGATCGA ACTGCGTTTC
AGCGTAGGCC TGTGGTGCGG CGTGCCGTGC CCAGGGGACA GTACTGCCAG CTTGCTGGCC
CAGGCCGATG CGGCGCTGTA CCAGGCCAAG GCCGCTGGGC GCAACACGGT GCACATGGCG
GCATTGGTCG AGGCGAGTTG A
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| Protein sequence | MIAHTPTLFA AVALVATILA FCLLLVGRSN RRDNLMLTGC GLLVHALAYV CYTVYAQAPL
WLSYGVGNSL LSLALAFYTA SLFRVREQVV PWRVIFVIPA CMLVGLMLLL DTLEPRMLLA
TLVLMLQCAM ILYWAWRYAE RPGRAHLLLE IGALISLVGL GMRVVAVANG TAVEMRYDTS
NLKQSISVAI GTATVMMYSI GLVLLAKERS ESRLQHLALR DVLTGTYNRR AILERFGVEL
DRARDQQGSL AVAMIDIDHF KRINDLYGHL AGDEVLCHCV RQLQQRLRQG DSLGRYGGEE
FLLLLPGTDR TGAMAALQGL REAIARSPAR FAGDQIELRF SVGLWCGVPC PGDSTASLLA
QADAALYQAK AAGRNTVHMA ALVEAS
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