| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3556 |
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| Symbol | |
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| ID | 5871347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 3956599 |
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| End bp | 3957618 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641548677 |
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| Product | putative periplasmic protease |
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| Protein accession | YP_001669783 |
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| Protein GI | 167034552 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.132568 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.518214 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAGTTTC TTGCCGAATA CGCAAGCTTT CTCGCTAAAA CCGCCACCCT GGTCATCGCC
ATCCTCGTGG TGCTGTCGGC CATCGCCGGG CTGCGTGGCA AAGGGCGGCG CAAACCAGGT
GGGCAATTGC AGGTCACCCG CCTGAACGAG TTCTACAAGG ATTTGCGCGA GCGGCTGGAG
TCCGGGCTGC TCGACAAGGC CCAGCTCAAG GCCCTGCGCA AGCAACAGGC CAAGGCGGAA
AAACAGCAGA AGAAGGGCAA GGCCGAGGAC AAGGGCCGGG TTTTCGTGTT GGACTTCGAT
GGCGACATCA AGGCCTCGGC CACTGAAAGC CTGCGCAACG AAATCACCGC GCTGTTGACC
CTCGCCACCC CGCGGGACGA AGTGGTGCTA CGCCTGGAAA GCGGCGGCGG CCTGGTGCAT
AGCTACGGCC TGGCTGCATC GCAGCTGGCG CGTATTCGTC AGGCGGGCAT ACCGCTGACC
GTGTGCATCG ACAAGGTGGC CGCCAGCGGC GGTTACATGA TGGCCTGCAT CGGCGAGAAG
ATCGTCAGCG CGCCATTCGC CGTGCTCGGT TCGATCGGCG TGGTGGCGCA ACTGCCCAAC
GTCAACCGCC TGCTGAAGAA GCACGACATC GACTTTGAAG TGCTGACCGC TGGCGAGTAC
AAGCGCACCT TGACCGTGTT TGGTGAAAAC ACCGAGAAGG GCCGGGAGAA GTTCCAGGAA
GACCTGGATA TCACTCACCA GCTGTTCAAG GACTTCGTCG CCCGCTATCG ACCGCAGTTG
CACATCGACG AAGTGGCCAC CGGAGAAGTC TGGCTGGGCG TGGCGGCACT CAACCGCAAG
CTGGTAGACG AATTGCAGAC CAGCGACGAG TACCTGAGCG AGCGTGCGCG CAACGCCAAC
CTGTTCCACC TGCATTATGC CGAGCGCAAG AGCTTGCAGG AGCGAATTGG CATGGCCGCC
AGCGGCACCG TGGAGAACAC GCTGGTGGGC TTGTGGAGTA AACTCGGCCG CCTGCGCTAA
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| Protein sequence | MEFLAEYASF LAKTATLVIA ILVVLSAIAG LRGKGRRKPG GQLQVTRLNE FYKDLRERLE
SGLLDKAQLK ALRKQQAKAE KQQKKGKAED KGRVFVLDFD GDIKASATES LRNEITALLT
LATPRDEVVL RLESGGGLVH SYGLAASQLA RIRQAGIPLT VCIDKVAASG GYMMACIGEK
IVSAPFAVLG SIGVVAQLPN VNRLLKKHDI DFEVLTAGEY KRTLTVFGEN TEKGREKFQE
DLDITHQLFK DFVARYRPQL HIDEVATGEV WLGVAALNRK LVDELQTSDE YLSERARNAN
LFHLHYAERK SLQERIGMAA SGTVENTLVG LWSKLGRLR
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