| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3534 |
|---|
| Symbol | |
|---|
| ID | 5871323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3938246 |
|---|
| End bp | 3938809 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641548653 |
|---|
| Product | peroxiredoxin |
|---|
| Protein accession | YP_001669761 |
|---|
| Protein GI | 167034530 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0450] Peroxiredoxin |
|---|
| TIGRFAM ID | [TIGR03137] peroxiredoxin |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.734574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.05332 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATCA TCAACAGCCA GGTCAAACCG TTCAACGCCA CCGCCTACCA CAAAGGCGAG
TTCGTTCAGG TCAGCGAAGC CGACCTGAAA GGCAAGTGGT CTGTCGTGTT CTTCTACCCG
GCCGACTTCA CCTTCGTTTG CCCGACCGAG CTGGGTGACC TTGCCGACAA CTACGCAGAG
TTCCAGAAGC TGGGCGTGGA AATCTACGGC GTGTCCACCG ACACCCACTT CACCCACAAA
GCCTGGCACG ACACTTCGGA CACCATCGGC AAGATCGAAT ACCCGCTGAT CGGTGACCCG
ACTCACGTCA TCTCGCGCAA CTTCGACGTG CTGATCGAAG AAGCCGGTCT GGCCGATCGC
GGTACCTTCG TGATCAACCC GGAAGGCCAG ATCAAAATCG TCGAACTGAA CGACGGTGGT
GTAGGCCGCG ATGCTGCCGA ACTGCTGCGT AAAGTGAAGG CTGCCCAGTA CGTTGCCGCT
CACCCAGGCG AAGTGTGCCC GGCCAAGTGG AAAGAAGGCG AAGCCACCCT GGCGCCGTCT
CTGGACCTGG TCGGCAAGAT CTAA
|
|---|
| Protein sequence | MPIINSQVKP FNATAYHKGE FVQVSEADLK GKWSVVFFYP ADFTFVCPTE LGDLADNYAE
FQKLGVEIYG VSTDTHFTHK AWHDTSDTIG KIEYPLIGDP THVISRNFDV LIEEAGLADR
GTFVINPEGQ IKIVELNDGG VGRDAAELLR KVKAAQYVAA HPGEVCPAKW KEGEATLAPS
LDLVGKI
|
|---|
| |