Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3519 |
Symbol | |
ID | 5871306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 3924631 |
End bp | 3926676 |
Gene Length | 2046 bp |
Protein Length | 681 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641548636 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001669746 |
Protein GI | 167034515 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.302801 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.288365 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCCA ATAGCGTTGC CAGGGCCCAT TCGCCCGATG TCGTCGTCAT GGATCCGCTG GTGGTTACCG GCGCCTACAC GCCCACCAGC AGCTTTGACC TGCCGTTTTC GGTCGATACC GTTGACCTGT CCCACGGCAC TGATGGCCAG CTTGGCGTCA ACCTGTCGGA AGTGCTGAGC AAGGTGCCCG GCCTGGTGGT GCAGAACCGG CAGAACTATG CCCAGGACCT GCAGATTTCC TCACGGGGCT ACGGTGCCCG TTCAGCGTTC GGTGTGCGCG GTATCAAGTT GCTGAGCGAT GGTATTCCTG CCAGTACCCC CGACGGGCAA GGGCAGGCAG CCACGCTGAA CCTGGACGTG GCCGAGCGCA TCGAGGTGCT GCGTGGCCCG GCTGCGACGT TGTATGGCAG CAACGCCGGT GGCGTGATCC AGATGTTCAC CCGCGACGGG CAGGGCCCGG CCCGCGTTGG CGCTGAAACC ACGTTCGGCA GTGACGGCTT CAACAAGAAT CACCTGTCCG CCGAGGGCGG TAACGACACC GCCGGTTTCG TGCTGGATGC CTCGCGCATG GACACCGATG GTTACCGCGA CCACAGTGCA GCACGCCGCG ACCAGACGTT CGCCAAGGTC AATTTCAAGC CCGACGACGA CTCGCGCATG GCGCTGATCT ACAGCAGCCT GGAGCAGAAC GACACGCAGG ACCCGCTGGG GCAGAAGTGG GATGCCTACA AGCACGACCC TCGTTCTACC GCGGTCGAGG CAGAGAAATA CAACACGCGT AAAAGCATCG ATCATCAACA GCTGGGCATG AACTACGAGC GCTATTTCGG TGATGCCACA TTGCAGTTCA ACCTGTACGC GGGGCGACGC AGTGTTGTGC AGTACCTGTC CATATCAGAA AAAGCACCTT CAAACGTGCA GCGTGGTGGC GGAGTCGTTG ACTTCGACCG CGAATTCCAC GGCGGCACCC TGCGCTGGAT CCAGCCGGTT GTCGAGGTGC CCGGTAACCT CACGTTCACC GTCGGCGCCG ATTACGACCA GAGCACGGAT GACCGCCGCG GCTACCAGAA CTTCAGCGGC GACCAGTTGG GCGTCAAGGG CGAACTGCGC CGCGACGAGC AGGACACGGC CACCAGCCTG GACCCCTACC TGCAGGCGCA CTGGGAAATC GGCAACTGGA CCAGCGAACT GGGGCTGCGC TACAGCACCA TGAAAATGCG CGTCGATGAC CATTACCTGG CCAACGGTGA TTCGAGTGGT TCGAAGACGT ACCAGCAGGC CACCCCGTCG CTGTCGGTGA TGTATGCGTT CACCCCCGAC CTGCGCGGCT ACGCAAGCGT TGGTAAAGGT TTCGAAACCC CCACGCAGGC CGAAATGGCC TATGCGCCGG GTGAGGTCGA ACGTTTCAAC TTCGGGCTCA AACCTGCCAC CAGCATGCAG TATGAAGTGG GTGTGAAGTA TCGCCTGGGC GAACGCACGC GCTTGAATGC GGCGGTGTAT GAAATTCAAA CCGATGACGA AATCGTCGTT GCCAACGCTA CGGCTGGCCG CACCAGTTAT CGCAATGCAG GGCGCACGAC AAGACGCGGT TTCGAGGCGA GCCTGCAGAG TGACCTGGGC GAGCAATGGC AGACCACGGT GGTGTACACC CGCACCGATG CGCGCTATGC CGAAGATGTC AGTTCGGCCA TCGAACGTGG CAACCGGCTG CCGGGTGTGC CGCTCGACAA CCTGTATGGC GAGCTGGTGT GGAAACCCGT TCCGTCGGTC AGCATGGGGG TAGAAGGGCA ATACCGCAGC AAGGTGTATG TGGACGACAG CAACAACGCC AAACCGGCAC CTGCGTATGC CGTATTCAAC TGGCGGACGC GTTTCGAACA GCACGTCGGG CCCTGGACGT TCCATCAACT GGTGCGTTTG GACAACCTGT TCGACCGGCA GTATGTGGGG TCGGTGATCG TTGGCGACAG CAACGGGCGT TATTACGAGG CAGCGCCTGG GCGATCGTGG TATGCGGGGG CGGGGTTGGA GTACCAGTTC AGATAG
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Protein sequence | MSANSVARAH SPDVVVMDPL VVTGAYTPTS SFDLPFSVDT VDLSHGTDGQ LGVNLSEVLS KVPGLVVQNR QNYAQDLQIS SRGYGARSAF GVRGIKLLSD GIPASTPDGQ GQAATLNLDV AERIEVLRGP AATLYGSNAG GVIQMFTRDG QGPARVGAET TFGSDGFNKN HLSAEGGNDT AGFVLDASRM DTDGYRDHSA ARRDQTFAKV NFKPDDDSRM ALIYSSLEQN DTQDPLGQKW DAYKHDPRST AVEAEKYNTR KSIDHQQLGM NYERYFGDAT LQFNLYAGRR SVVQYLSISE KAPSNVQRGG GVVDFDREFH GGTLRWIQPV VEVPGNLTFT VGADYDQSTD DRRGYQNFSG DQLGVKGELR RDEQDTATSL DPYLQAHWEI GNWTSELGLR YSTMKMRVDD HYLANGDSSG SKTYQQATPS LSVMYAFTPD LRGYASVGKG FETPTQAEMA YAPGEVERFN FGLKPATSMQ YEVGVKYRLG ERTRLNAAVY EIQTDDEIVV ANATAGRTSY RNAGRTTRRG FEASLQSDLG EQWQTTVVYT RTDARYAEDV SSAIERGNRL PGVPLDNLYG ELVWKPVPSV SMGVEGQYRS KVYVDDSNNA KPAPAYAVFN WRTRFEQHVG PWTFHQLVRL DNLFDRQYVG SVIVGDSNGR YYEAAPGRSW YAGAGLEYQF R
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