| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3505 |
|---|
| Symbol | |
|---|
| ID | 5871292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3909190 |
|---|
| End bp | 3910359 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641548622 |
|---|
| Product | acyl-CoA dehydrogenase type 2 |
|---|
| Protein accession | YP_001669732 |
|---|
| Protein GI | 167034501 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.0636117 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGC CAAACCCCCT GCTGGAAGAC CTGAGATCCA TCCTGCCGAC CATCGCCGCC
AATGCCATGC GTGCAGAACA GGACCGCAGC GTGCCGGCAG AGAACATCAC CCTGCTGAAA
AGCATCGGCA TGCACCGCGC TTTCTTGCCC AAACACTACG GCGGCATGGA AATCACCCTG
CCGCAATTCG CCGAGTGCAT CGCCCAGCTG GCGGGCGCCT GCGCCAGCAC CGCCTGGGCC
ATGAGCTTGC TGTGCACCCA CAGCCATCAG ATGGCAATGT TCTCGCCCAA GCTGCAGCAG
GAGGTGTGGG GCAGCGACCC GGATGCCACT GCCAGCAGCA GTATCGCGCC ATTTGGCCGT
ACCGAAGAGG TCGAGGGTGG CGTGTCGTTC AGCGGCGAGA TGGGCTGGAG TTCTGGTTGC
GACCACGCCG AGTGGGCGAT CGTAGGTTTT CGCCGCAACA ATGCCGAAGG CACTCAGGAT
TACTGCTTCG CCATCCTACC GCGCAGCGAT TATGAAATCC GTGATGACTG GTATGCCGTG
GGCATGCGCG GCAGTGGCAG CAAGACCTTG ATCGTGCGTG ACGCCTTCGT GCCTGAGCAC
CGTATCCAGA AAGCCAAGGA CATGATGGAG GGCAAGTCGG CGGGCTTTGG CCTGTACCCG
GACAGCAAGA TCTTCTTCGC CCCATACCGC CCGTACTTCG CCAGCGGTTT TTCCACCGTG
AGCCTCGGCG TTGCCGAGCG CATGCTGGAG GTGTTCCGCG AGAAAACCCG CAACCGCGTG
CGTGCCTACA CCGGTGCTGC CGTGGGCGCT GCTACCCCGG CGCTGATGCG CCTGGCCGAA
TCGACCCATC AGGTGGCCGC CGCCCGGGCA CTGCTGGAAA AAAGCTGGGA CGAAATTGCC
GAGCACAGCG CCCGCCATGA ATACCCCTCG CGTGGCACGC TGGCATTCTG GCGCACCAAC
CAGGGCTATG CAGTGAAACT GTGCATCCAG GCCGTGGACC GCCTGATGGA AGCGGCCGGT
GGTGGCGCCT GGTTCGAGAG CAACGAACTG CAACGCCTGT TCCGCGATTC GCACATGACC
GGCGCCCATG CCTACACCGA CTACGACGTT TGCGCGCAGA TCCTCGGCCG CGAGTTGATG
GGCCTGGAGC CCGACCCGAC CATGGTCTGA
|
|---|
| Protein sequence | MKKPNPLLED LRSILPTIAA NAMRAEQDRS VPAENITLLK SIGMHRAFLP KHYGGMEITL
PQFAECIAQL AGACASTAWA MSLLCTHSHQ MAMFSPKLQQ EVWGSDPDAT ASSSIAPFGR
TEEVEGGVSF SGEMGWSSGC DHAEWAIVGF RRNNAEGTQD YCFAILPRSD YEIRDDWYAV
GMRGSGSKTL IVRDAFVPEH RIQKAKDMME GKSAGFGLYP DSKIFFAPYR PYFASGFSTV
SLGVAERMLE VFREKTRNRV RAYTGAAVGA ATPALMRLAE STHQVAAARA LLEKSWDEIA
EHSARHEYPS RGTLAFWRTN QGYAVKLCIQ AVDRLMEAAG GGAWFESNEL QRLFRDSHMT
GAHAYTDYDV CAQILGRELM GLEPDPTMV
|
|---|
| |