| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3496 |
|---|
| Symbol | |
|---|
| ID | 5871283 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3900767 |
|---|
| End bp | 3901426 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641548613 |
|---|
| Product | 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit |
|---|
| Protein accession | YP_001669723 |
|---|
| Protein GI | 167034492 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | [TIGR02305] 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.982111 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCATG CCCTGCATGA CGTTGCCAAC GGCACCCTGT TCGGCGTCGC GCTGAACTAC
CGGGGTTTGC TGCAGCAGCA CCAAGCGGCG TTCGTCGAAG CACCGTACAA GCAACTGCCA
GTCAAGCCAG TGCTGTTCGT CAAAACCCCG AACACGCGCA ACCAGCATGA AGGCCAAGTG
CTGTTCCCGG CCAACGTACA GCGCCTGCAA CCTGGCCCGG CGCTGGGTGT GGTGATTGGC
AAGGACGCCA GCCGCGTCAG TGTGGAGGAC GCCCTGGAGC ATGTGGCGGG CTACACCATC
GTCAACGAAA CCAGCCTGCC CGAAGACAGC TACTACCGCC CGGCCGTCAA GGCCAAGTGC
CGTGATGGCT TCTGCCCGAT CGGCCCAGCG TTGGTGCCGG CCAGCCAGGT AGCCAACCCC
GATGCCCTAG GCCTGCGCCT GTATGTGAAT GGCGAACTGC GCCAGCACAA CAACACCGCC
AACTGCGTGC GCACGGTGGC CCAGCTGATT GCCGAAATCA GCGAGTTCAT GACCCTGCAC
GCTGGCGACA TCCTGATCAC CGGCACCCCC GAGGGCCGCG TCGATGTACA GCCAGGCGAC
CGCGTCGATA TCGAGATCGA CGGCCTGGGC AAGCTGACCA ACCACATCGT CGCCGAGTGA
|
|---|
| Protein sequence | MSHALHDVAN GTLFGVALNY RGLLQQHQAA FVEAPYKQLP VKPVLFVKTP NTRNQHEGQV
LFPANVQRLQ PGPALGVVIG KDASRVSVED ALEHVAGYTI VNETSLPEDS YYRPAVKAKC
RDGFCPIGPA LVPASQVANP DALGLRLYVN GELRQHNNTA NCVRTVAQLI AEISEFMTLH
AGDILITGTP EGRVDVQPGD RVDIEIDGLG KLTNHIVAE
|
|---|
| |