| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3369 |
|---|
| Symbol | |
|---|
| ID | 5871154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3805381 |
|---|
| End bp | 3806277 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641548485 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001669597 |
|---|
| Protein GI | 167034366 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR03339] aminoethylphosphonate catabolism associated LysR family transcriptional regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.384644 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGTTT CCCACGCACA ACTCAAGGCT TTCCACGCGG TGGCCGTACA CGGCAGCTTT
ACCCGTGCAG CGGAAAAGCT GTTTCTTACC CAGCCTGCGG TGTCGGACCA GGTGCGCAAA
CTGGAGGAGC GCTTCGGCGT TTTGCTGTTC CACCGCAACA AGCGCTCGGT ACAGCTCACC
GACCTGGGCG AGCGCCTGCT GGGCATCAGC CAGCGCCTGT TCGCCTGCGA GGCCGAAGCC
CATGACCTGC TGCAGGACTC GCGCGCGCTG CACACCGGCA GCCTGGTGCT GGCGGTGGAT
GCGCCGGTGC ACGTGCTGCC GCAGATCGCC CGGTTCTGCC AGCGTTACCC AGGTATTCAG
GTGAAAATCG AGACCGGCAA TACTGACGAA TCGCTGGCCC GGTTGTTCAG CTACCAGGCA
GACCTGGCCT TGCTGGGCCG GGATGTCGAC GATGAGCGCC TGCATTGCCT ACCGCTGCGC
CGCGACCCGA TGGTGGCGTT TGTTTCGCAC AACCACCCAT GGGCCAGCCG TGGGTCGATC
AGCCTGGCTG ACCTCGATGA CATGCCACTT GTGCTGCGTG AGCCTGGTTC AGTGACGCGC
CAGACACTGG AGGAAGAGAT GCAACGGGCG GGGCTGCGGA TTCGTCCGGC GATCCAGGTG
GAGGGCCGGG AAGCGGCGCG TGAGGCGGTG GTGGTGGGGA TTGGCGTGGG GGTGGTGTCG
GCGGCGGAAT TTGGCGCTGA TGCGCGAGTG TGTGCGTTGC CAATTGTGGA TTGTCAGCGG
CATTTGACCG AGACGTTGGT GTGCTTGAGC GAGCAGCGCA CACGACGCGT GGTGGCGACC
TTCTTGCAGA TGGTTGAAGA AGAGGCCAGT GCAGGCAACC CGACTATGCT GGGATAA
|
|---|
| Protein sequence | MSVSHAQLKA FHAVAVHGSF TRAAEKLFLT QPAVSDQVRK LEERFGVLLF HRNKRSVQLT
DLGERLLGIS QRLFACEAEA HDLLQDSRAL HTGSLVLAVD APVHVLPQIA RFCQRYPGIQ
VKIETGNTDE SLARLFSYQA DLALLGRDVD DERLHCLPLR RDPMVAFVSH NHPWASRGSI
SLADLDDMPL VLREPGSVTR QTLEEEMQRA GLRIRPAIQV EGREAAREAV VVGIGVGVVS
AAEFGADARV CALPIVDCQR HLTETLVCLS EQRTRRVVAT FLQMVEEEAS AGNPTMLG
|
|---|
| |