| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3357 |
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| Symbol | |
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| ID | 5871142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3789598 |
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| End bp | 3790461 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641548473 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001669585 |
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| Protein GI | 167034354 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.102142 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTAG ACCTGCAAGC CTTGTACCCC AGGCTGATCC ACCTGATGCT GGATACGGTG
TTCGTGGTCG ACAGGGACAA CCAGATCGTC TTCGTCAGCG ATGCCTGCGA AGTGTTGCTG
GGCTACAAAG CCTGCGAACT GGTTGGCACA CCGATCACCG ACTACATGCA CCCTGACGAC
CTTGCAGCCA CGCGCGCCTC TATTGTGCGG GTGATGAACG GCCAGGCGCA CTACGACTTC
CGCAACCGCT ATGTACGCAA GGACGGCGGC GTCGTGCACA TCCTGTGGGC AGCCAGCTGG
TCCGAAGAGG CTCAAGCGCG TATCGGTGTG GCGCGGGATG TGACCGCCTT GCGCCAGGCC
GAAGATGAAC TGCGCTTCCT CGCCCATCAC GACCCGCTGA CCCGGCTGGC CAACCGGGCC
ATGTTCAATG AACGCCTGGA CACCGCCCTT GCCACGGCAC GGCGACACGA TCACACGCTG
GCGTTGCTGT TTCTGGACAT CAACGACTTC AAGGAAATCA ACGATGTGCA CGGGCATGCT
GTGGGTGACC GGGTGCTGTG CACGCTTGCA CGGCGGCTGG AAGGTTGCGT AAGTGAAACC
GATACGGTGG CGCGCATGGG CGGTGACGAG TTCACCGTGC TGTTGACCGA CTGCCCATCG
CCAGAGGCCA TCGCCGAGCA GGTAGCCCGT ATTCTCGCAG CCATGGCCGA GCCACTCGGC
ATGGAGTTGT CCGGCATCGA CGCGCCCTCC TGCAGCATCG GCGTGGCGTG CTTCCCTGAA
GATGGCCACG ATGCCGACAT GCTGCTGCGC CATGCCGACG GGGATATGTA CCGGGTCAAG
CGAAAACACA CAGCGACCGG GTAA
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| Protein sequence | MPVDLQALYP RLIHLMLDTV FVVDRDNQIV FVSDACEVLL GYKACELVGT PITDYMHPDD
LAATRASIVR VMNGQAHYDF RNRYVRKDGG VVHILWAASW SEEAQARIGV ARDVTALRQA
EDELRFLAHH DPLTRLANRA MFNERLDTAL ATARRHDHTL ALLFLDINDF KEINDVHGHA
VGDRVLCTLA RRLEGCVSET DTVARMGGDE FTVLLTDCPS PEAIAEQVAR ILAAMAEPLG
MELSGIDAPS CSIGVACFPE DGHDADMLLR HADGDMYRVK RKHTATG
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