Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3348 |
Symbol | |
ID | 5871133 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3766359 |
End bp | 3768602 |
Gene Length | 2244 bp |
Protein Length | 747 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641548464 |
Product | TonB-dependent receptor |
Protein accession | YP_001669576 |
Protein GI | 167034345 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACCAAC GTCATCCACT GGCCCGCCAG ATCAGCCTCG CGCTGCTGTT GGCCGGCACC GGCAGCCAAG CTATCGCCGC CGACGAAAAC AATAAAAACG AACCAGCCCT GGAAACTGTC ACCGTCACCG CCCAGCATCG CGAACAGACC TTGCAGGAAG TCCCGGTCGC CGTATCGGCC ATCAAAGGCA CCAGCATCAC TGCCGACGGT GTGCGCTCGA TGGGCGACAT CACCACCTTC GTGCCCAACG CCTCGGCCAA GAACCCCGAC GGCGACGGCC GCCCGCGCTG GTACATCCGT GGCCTGGGCA CCGGCGACAC CGGTGCGGCA ACGGTCTACC CAGTGGGCAT CTACGCCGAT GACGTGTACC TCAACGCCCC CATCGCCGGT GGCGGGCCGT TGTTCGACCT GGAACGCATC GAGATCCTGC GTGGGCCGCA AGGCACCCTG TATGGCAAGA ACACCACTGC CGGTGCAGTG AACGTGATCT CGAAAAAGCC GACGTTCGAC ACCGATGGCT ATGGCACGGT CGGCTTTGGC AGCAAGAACG AGCGCATCGT CACCGGTGCC ATTGGTGGTG CGCTGGTGGA TGAAAAACTG GCCGGGCGAG TAGCGCTGTA TTCCGAAGAA CGCGACGGTT TCCAGAACAA CGACTTCGAC GGCAACACTT ATGGCGACGT GAACAAAAAG GCCATCCGCC TGCAGTTCCT GGCCCAGCTC AACCCCGACC TGGACGCCCT GCTCAAGCTG CACAGCCGCC AGTTCAAAGG CGACGGCAGC AATGGTTCGC TGCCGGTGGG CCGCTACTAC AACGTCGGTT ACGAACGCCC GCAGGGTCGC GACATTTCGC TGAACGTCAA CGAAGACTAC CGCCTGGACC ACGACGGCGC CTCGCTGACC TTCAACTGGT ACCTGGGCGA CTACACGCTG ACCTCGATCA GCGCCTACGA CTACATCCGC AACCGCTCCA CCAGCGATGC CGACTACACC CCCTACGAGG TCAACGGCGC GGCCATCACC GACAACAGCT ACCGCCAGTG GTCGCAGGAG CTGCGCCTGG CCTCGCCGGA AGACCGCCCA CTGCACTGGT TGGTGGGCGC CCACTACTTC CATGAAGACC TGGACAGTTC TGCCCAGCGC ATCGTCACCC CCGGCCCCAC GCCCAACGGT ACCGGCTCGA ACCAGGTGGG CACTACCGCG TTCCGCGACC TGGGCTACGA TCACCGCACC GACAGCTACG CGCTGTTCGG CAACTTGACC TATGACTTCA CCGATGACTT CAGCGTGACC GGCGGCCTGC GCTGGACCCA GGAGAAAAAG GACATCGACC TGGACCTGGT GCAGTTGACC CGCGCCACGG CCAACGGCCC GCTGATTCCA CTGGGCGGCG TAGGCACCAA CGGCAACCGT CAGGAAGACA AGACCTGGGA AGCCTGGACC TACGACCTGA CCCCCGAGTA CCGCATCAAC GACAACCTGC GGGTGTTCTT CCGCTACGCC CACGGCTTCC GTTCGGGTGG CTTCAACACC GGGCTGTCGA CCAGCCTGGC GCAATTGACC ACGGTCGACC CGGAAGAACT GGATGCCTAC GAACTGGGGC TGAAGTCGGA GTGGTTCGAC CGTCGCCTGA CCGTCAACGC CAACCTCTTC TACTACGACT ACTCCGACAT CCAGGTGAAC CTGCTGACAG TGAACAGCGG CGTACTCACC ACCGCATTGA CCAACGGCGC CAAAGGCAAG GTCAAGGGCG CGGAGCTGGA GGTCGAGGGC CAGCCGACCG AGCGCCTGCA CCTGCGCGCG GCGGTGTCGT TCCTGGACAC CGAGTACACC GATTTCAAGA ACACCAACCC CACCACCGGC GCGGTAACCG GCGACTACAG CGGCAACAGC TTCGTGCGCT CGCCACGCAA CGTGGTGTCG CTGGGTGCCG ACTACACCAT CCCGCTGGAG GTCGGCGGCA AGCTGGTGGC CGGTGGCGAC GTGAGTTTCC GCGACAAAGA GTATTTCCTG GCCGACCGCC AGAGCAGCGC CGACGAAACC CTCAGCCAGC CCCACTACAC CCTGGCCAAC GCGCGGCTGA GCTGGTTCAG CCATGACGAC AAGCTGAGCG TGACGGGCTT CGTCAACAAC CTCACCGACC GCCGCTACCA GGTGCATGGC CGGCCCAACG GCACTGCCGG GCAGTACGTG ATCACCTACG GCGACCCACG CACCGTCGGG CTCAGCGTTA CCAGCCGCTT CTGA
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Protein sequence | MHQRHPLARQ ISLALLLAGT GSQAIAADEN NKNEPALETV TVTAQHREQT LQEVPVAVSA IKGTSITADG VRSMGDITTF VPNASAKNPD GDGRPRWYIR GLGTGDTGAA TVYPVGIYAD DVYLNAPIAG GGPLFDLERI EILRGPQGTL YGKNTTAGAV NVISKKPTFD TDGYGTVGFG SKNERIVTGA IGGALVDEKL AGRVALYSEE RDGFQNNDFD GNTYGDVNKK AIRLQFLAQL NPDLDALLKL HSRQFKGDGS NGSLPVGRYY NVGYERPQGR DISLNVNEDY RLDHDGASLT FNWYLGDYTL TSISAYDYIR NRSTSDADYT PYEVNGAAIT DNSYRQWSQE LRLASPEDRP LHWLVGAHYF HEDLDSSAQR IVTPGPTPNG TGSNQVGTTA FRDLGYDHRT DSYALFGNLT YDFTDDFSVT GGLRWTQEKK DIDLDLVQLT RATANGPLIP LGGVGTNGNR QEDKTWEAWT YDLTPEYRIN DNLRVFFRYA HGFRSGGFNT GLSTSLAQLT TVDPEELDAY ELGLKSEWFD RRLTVNANLF YYDYSDIQVN LLTVNSGVLT TALTNGAKGK VKGAELEVEG QPTERLHLRA AVSFLDTEYT DFKNTNPTTG AVTGDYSGNS FVRSPRNVVS LGADYTIPLE VGGKLVAGGD VSFRDKEYFL ADRQSSADET LSQPHYTLAN ARLSWFSHDD KLSVTGFVNN LTDRRYQVHG RPNGTAGQYV ITYGDPRTVG LSVTSRF
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