| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3346 |
|---|
| Symbol | |
|---|
| ID | 5871131 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3764035 |
|---|
| End bp | 3765099 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641548462 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001669574 |
|---|
| Protein GI | 167034343 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAC CCCTCGATAC CTTGTGGTAC ACCCGTTGTC CGGTGCCCAC GGGCCTTGGC
ATTGCCGTGC AGCAAGGCTG GCTGCAGGAG GACCTGGCCA GCCTTGGCAC CCAGGTGCAG
TCGCTGCGCG AAGCCGAGCA GCAGGCCGTG CGTGAATCGC ACTTTGACCA CAGCCTGCTG
AACTCGGTAC GTCATGGCGG CAGCATCCCG GCCATCTGGG CCCGCGCCCA GGGCCGCGAT
ACCCGCGTGA TCGGCCTGTC GTGGGCCGAT GAGGCGCAGT TGATCCTGAC CCGACCAGAC
AGCGGCATCC ACACCGTCAA AGACCTCAAG GGCAGGCGCT TCGGCCTGCC CGACTGGGCT
GCGGCGCAAA TCGACTTCAC CCGTGCCCAG GCCCTGCGCG GCCTGGAAAA CGCCTTGAAA
CTCGAAGGGC TGCAAGTGGG CGACGTAGCG TTGGTCAACT ACCGCTACGA CGGCACCTTC
AGCGACCGCC CAGTGCGCAA CGTGGCCGGC ACTCCGGTAT CCAGCACCCA GAGCGAAGGC
CGTAACCTGG AGCTGGCCGG CCTGCTGCGC GGCGAGGTGG ACGCGATCTT CCTCAAAGGT
GCCAGCGCCG TGCAACTGGC CCACGCCTTT GCCCTGCGCA CGGTGATCGA CACCGGCAGC
CACCCCGACC CGCTGATCCG CAGCAACAAT GGCACACCGC GCACCCTGGC GGTGGACAGC
CACCTGCTGG CGCAGCACCC GCAGGTGGTG CACACGCTTC TTGGCTCGGT GCTGCGCGCC
GAGCGCTGGG CCCATCAGCA CCCGGATGAA ACCCGCCGCT ACCTGGCGCG GGAAACCAAC
AGCAGCGAGT ACTGGGTGCA AGTGGCCTAC GGCACTGACG CCCACCTGCG CCTGAGCACC
CGCCTGGACG ATCAGGCCAT TACCGCCTTG CAGGACTTTG TCGAGTTCCT CGAACGCTGG
CGCTTCATCC CGGCGCGCTT CGAGGTGCGC GACTGGATCG CCCAGCAACC ACTGGACCAG
CTGCTGGCCC CCACCTCCAT GGAAAGGAAA CCCGTTACCC CATGA
|
|---|
| Protein sequence | MSQPLDTLWY TRCPVPTGLG IAVQQGWLQE DLASLGTQVQ SLREAEQQAV RESHFDHSLL
NSVRHGGSIP AIWARAQGRD TRVIGLSWAD EAQLILTRPD SGIHTVKDLK GRRFGLPDWA
AAQIDFTRAQ ALRGLENALK LEGLQVGDVA LVNYRYDGTF SDRPVRNVAG TPVSSTQSEG
RNLELAGLLR GEVDAIFLKG ASAVQLAHAF ALRTVIDTGS HPDPLIRSNN GTPRTLAVDS
HLLAQHPQVV HTLLGSVLRA ERWAHQHPDE TRRYLARETN SSEYWVQVAY GTDAHLRLST
RLDDQAITAL QDFVEFLERW RFIPARFEVR DWIAQQPLDQ LLAPTSMERK PVTP
|
|---|
| |