Gene PputGB1_3325 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_3325 
Symbol 
ID5871110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp3734467 
End bp3734985 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content64% 
IMG OID641548441 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001669553 
Protein GI167034322 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCGTC TCGACTCCGC TTACAGCCAG CAGATTCACA CCTATTACAC CAACCACCAC 
GGCTGGATTC GCGGTTGGCT GCACAAGCGC CTGGGCAATG CCAGTGATGC CGCCGACCTG
GCCCATGACG TGTTCGTGCG CCTGCTGAGC AAGCCGCAGC AATTCCAGAC CGAGCAGCAC
GCGCGCGCCT ACCTGAGCAC CGTCACCCGC CATCTGTGCA TCGATTTCTG GCGCCGTCAG
CACCTGCAGC AGGCTTGGCT GGAGGCCTTG GCCGCCCTGC CCGAACCCTT GGCACCCAGC
GAGGAAGAGC GTGCACTGGT GTTCGAGGCA CTCGAGCAGG TGCAGCGAAT GCTCGCGCGA
TTGCCGGACA AGGTCTGCCA GGCCTTTCTG CTGGCCCACG TACAGGGCCT GGGCTACCGG
GAAATCGCCA GGCAGCTGCA GGTTTCCGAA CGCAGCGTGA CCAAGTACAT GGCCCAGGCG
ATGTACCAGT GCCTGCTGCT GGAACTGGAC CTGCCATGA
 
Protein sequence
MSRLDSAYSQ QIHTYYTNHH GWIRGWLHKR LGNASDAADL AHDVFVRLLS KPQQFQTEQH 
ARAYLSTVTR HLCIDFWRRQ HLQQAWLEAL AALPEPLAPS EEERALVFEA LEQVQRMLAR
LPDKVCQAFL LAHVQGLGYR EIARQLQVSE RSVTKYMAQA MYQCLLLELD LP