| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3312 |
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| Symbol | |
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| ID | 5871097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3715746 |
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| End bp | 3717434 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641548428 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001669540 |
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| Protein GI | 167034309 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTACCC AGTACAGGGC GCCTGAACCT GCACCGGCGC TGAAAGACCT GACCGAGCGG
GTACGGTTCG AAGGCACCGA AGGCAAGATC TGGCTGGACG AACAACGCAT GCTGCTGGTG
CAAGCTGCGA CCATGGCCAG CATGCGTCGC GAGCTGATCG AAATGCTCGG CGAAGAACGG
GCCAAAGGCT TCTTCCTACG CCTGGGCTAC CAGTCAGGCC TGAAGGACGC CGAGCTTGCC
CGCAAGCTGC GGCCCAACGG CAACCCGGTG GAAATGTTCT TCATCGGCCC GCAGTTGCAC
TCGCTCAAAG GCATGGTCAA GGTGCGCCCG CAGCAACTGG AAATCGACCT GGACAACGGC
CACTTCTACG CCGACATCGA GTGGCAGGAT TCCTTCGAGG TGGAAAACTG CCAGTCAGAA
GGCCTGCATT CCGAGCAGCC GGTGTGCTGG ATGCTGCTCG GCTACGCCAT CAGCTACAGC
TCGTTCTTCC TTGGCCGTCA GGTGCTGTAC AAGGAAGTCA GCTGCCGTGG CTGCGGTGGT
AGCGAGTGCC GCATCATCGG CAAGCCGGTG GAGCAATGGG ACGATGCCGA GACCTTCCTG
CGCTACTTCC AGAGCGACCC GGTAATCGAC GAGCTGCAAT CGCTGCAGGT GCAGGTAGCC
AACCTGCGCC AGCGCCTGCA ATACGAGTCA GGGCAGTTCT ACGGCATTGG CCAGTCGGCG
GTTTACCGGC GCTGCTGCGC GCTCACCGAC AAGGTCGCCC CAGGCAAGGC CTCGGTATTG
CTGCTGGGTG AAACCGGGGT GGGCAAGGAA GTGATCGCCC GCAGCCTGCA CCTGCGCAGT
GAGCGTGCCG GCGCGGCATT CGTCGCACTG AACTGCGCGA CCATCCCGCC AGACCTGATC
GAAGCCGAGC TGTTCGGCGT CGAAAAAGGC GCCTACACCG GCGCCCAGCA GGCTCGCATG
GGGCGCTTCG AGCGGGCCAA CGGCGGCACG CTGTTCCTGG ACGAGATCGT CGAGTTAACC
CCGCGAGCCC AGGCCAGCCT GCTGCGCGTG CTGCAGGAGG GCGAACTGGA GCGGGTGGGC
GACAGCCGTA CGCGGCCGGT GGACGTGCGG GTGATCGCTG CCACCCACGA GAACCTCGAA
CAAGCGGTCA AGGACGGGCG TTTCCGTGCC GACCTGTTCT ACCGGCTGAA CGTGTTCCCG
GTGCACATCC CGGCGCTGCG TGAGCGCCGC GAAGACATCC CGCTGCTGAT CGAGCACTTT
CTCGGCCGCC TGCACCAAAG CTACGGCAAG AAAACCCGTG GCCTGAGCGA CCGAGCGCTG
CAGGTGTGCT TGCAATACGA CTGGCCAGGC AACATCCGCG AGCTGGAAAA CCTGATGGAG
CGCGGCGTGA TCATCACCGA CGAGAACCAG AGCATCGGCC TGGACGCGCT GTTCCCGCAT
GAGCCGCCGG CTATCGACAG CATCGGCCTG GGTAGCGATG GCCGGCTGGT CGCGGCCAGT
GACCAGGCTG CGCCTGGCTG GGTGGCGCAG ATTCTCGACA GCGGTACTGG CCTGGATGCC
GTCGAAGACG CGCTGATGCA GGAAGCCATG CAGCGCTGCG GGCAGAATGT TTCTGAAGCC
GCGCGCCTGC TCGGCGTAAC CCGCCCTGCC CTTGCCTATC GGCTGAAGAA AGCCCCCGAC
AAGCCTTGA
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| Protein sequence | MITQYRAPEP APALKDLTER VRFEGTEGKI WLDEQRMLLV QAATMASMRR ELIEMLGEER
AKGFFLRLGY QSGLKDAELA RKLRPNGNPV EMFFIGPQLH SLKGMVKVRP QQLEIDLDNG
HFYADIEWQD SFEVENCQSE GLHSEQPVCW MLLGYAISYS SFFLGRQVLY KEVSCRGCGG
SECRIIGKPV EQWDDAETFL RYFQSDPVID ELQSLQVQVA NLRQRLQYES GQFYGIGQSA
VYRRCCALTD KVAPGKASVL LLGETGVGKE VIARSLHLRS ERAGAAFVAL NCATIPPDLI
EAELFGVEKG AYTGAQQARM GRFERANGGT LFLDEIVELT PRAQASLLRV LQEGELERVG
DSRTRPVDVR VIAATHENLE QAVKDGRFRA DLFYRLNVFP VHIPALRERR EDIPLLIEHF
LGRLHQSYGK KTRGLSDRAL QVCLQYDWPG NIRELENLME RGVIITDENQ SIGLDALFPH
EPPAIDSIGL GSDGRLVAAS DQAAPGWVAQ ILDSGTGLDA VEDALMQEAM QRCGQNVSEA
ARLLGVTRPA LAYRLKKAPD KP
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