| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3233 |
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| Symbol | |
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| ID | 5871018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3621473 |
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| End bp | 3621988 |
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| Gene Length | 516 bp |
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| Protein Length | 171 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641548349 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001669461 |
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| Protein GI | 167034230 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAACCC CCGCTTACAT CAAGATCGAA GGCAAGACCC AAGGCAACAT CACCGCAGGC
GCATTCACCT CCGACTCAGT CGGCAATGTA TTCGTCGAAG GCCACGAAGA CGAGATTCTG
GTGCAGGAGA TCAAGCACCA GGTGACCGTT CCCACCGATC CGCAAAGTGG CCAGCCTGCT
GGCCAAAGGG TGCACAAGCC CTTCATTTTC ACCAGCTCAC TAAACAAAGC CACACCATTG
ATGTACCAGG CGCTGGCCAG CGGCGAAATG CTGCCAGTCG TTGAAGTGAA CTGGTACCGC
ACCTCGGTGG AGGGGAAGCA AGAGCATTTC TTCACCACCA AGCTGGAGGA CGCCACCATC
GTGGACATCA ATACCACCTT GCCGCATGCC CAAGACCAGA CAAACGCTAA CTATACGCAG
TTGATCGAAG TGGCAATGTC ATACCGCAAG ATTTCCTGGG CCCACGTGAC GGCGGGTACG
GAAGGCTCCG ACGACTGGCG CAAACCGATC GCCTGA
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| Protein sequence | MPTPAYIKIE GKTQGNITAG AFTSDSVGNV FVEGHEDEIL VQEIKHQVTV PTDPQSGQPA
GQRVHKPFIF TSSLNKATPL MYQALASGEM LPVVEVNWYR TSVEGKQEHF FTTKLEDATI
VDINTTLPHA QDQTNANYTQ LIEVAMSYRK ISWAHVTAGT EGSDDWRKPI A
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