| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3227 |
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| Symbol | |
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| ID | 5871012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3614983 |
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| End bp | 3616749 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641548343 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001669455 |
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| Protein GI | 167034224 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTGA AAGACAGTTT CAGCGAAGAA CTGCGTTACC TGCACGAACT CGGGAACGAC
TTCGCCAAAG ACAACCCACA ACTCGCCCGG TTGCTTGGCA ACGGTGCCAG CGACCCCGAT
GTCGAACGCC TGATGGAAGC CTTCGCATTC CTGACCGCCA AGCTTCGGCT CAAGCTGGAA
GACGACCTGC CAGAGCTGAC CCATCCCATG CTGCAGTTGC TGTGGCCGAA TTATCTGCGC
CCCCTCCCCA GCGCAACGAT CATCCAGTTC AGCCCGATCA AGCAATCCCT CAGCCAGTCA
CAACGCATCC CAAAGGGGTC GAGGCTGTTC TCGAAACCGG TAGACGGCGT GGCCTGTGAG
TTTCGCACCT GCACAGCGGT CAACGTTCAT CCATTCGAGA TCGACACGGT GGCCGCAACC
CAGACACTTG ACAGTTCTGT GGTCAGTATC GGCCTTCAAA TACTGGTCGA GCGGCCGTTG
AACAGTTTGG GCTGTACCAG CATCGACTTT TACCTCTCCG GCGATACCCG CACGGCACGC
ACGCTTTACC TGTGGATTTC TCAATACCTC AAGCATGTCA GCGTGGCCAT CGATGGCGAG
GCACGTCGTC TGCCGGCAAA CAGCATTACG TTCCCAGGGT TCAGCCCCGA TGACGCCATG
CTGCCTTACC CACAAAACGT CTTTGATGGT TACCGGATCC TGCAGGAGTA CTTCGCTTTC
CCCCAGCGCT TCCACTTCTT CAGTGTGACT GGGCTGGAGA AAATCTGGCC AGCTCATGAC
AGCGCGCGCA TATGCCTAGA GTTTCACTTC ACGCGCCAGC TACCCGACTC GTTGCGTGTC
GGCAGAGCAG ATTTCAACCT GTTCTGCGCA CCTGCGGTGA ACCTGTTCCA GCACAGCGCC
GAACCTATCG ATCTGTCCGG CGAGGACGCC TTGGTTCCAC TGAAGCCCAA GGGCACAGAG
CCGCACGGAT ACGAAATCTT CAGTGTCGAC CAGGTCATTA GCACCCGAAC GACAACAGAC
GGAAAAATCG GTGAACACCT ACGTACCTTC CGTCCCTTCG AGTCGTTTGC CCATGAAATC
GAGCATATTC AGGGGCGCAC GGCGCTGTAC TACCGCTACC AGCTGGAAGA GTGCCTGCAC
GGCGATGGCG TCATGCATCG AATCGCCTTC GTCCGTGCCG ACGCCAATAG CTACATAGGC
GAGCTGGAAA CCGCGTCCAT CGACCTGACC TGCACTAATC GGGACCTACC GCTGGCGCTG
GGCATCGATG ACATCAACGT CCTGACCGAA CTCACGCCCC CGCTGGCCAC CTACACCAAC
CTCTGTAAAC CCACCCGTCC CTGCCGCCCG GTGCTGGACG GCCAGTTGCA ATGGGCATTG
ATTTCAAACA TGTCGCTCAA CTACCTCTCC CTGCTCTCGG TAGAGCCGCT TAAAGCAGTG
ATACGAGCCT ATGACTTCAT GGCCCTACAC GACATCCAGC AGGCCCGCAC CACCCGTAAA
CGCCTGGAAG GTATGCGCGA TATTCATACA CAACCCATGG ATTGGCTAAT AAAGGGACAA
CCTATTCGTG GTCTGCACAC CCGGCTGAAA CTGGACCAGA CCGCCTTCCT TTGCGAAGGC
GACTTGTACT TGTTCAGTTG TGTGCTCGCC CACTTCTTCG CCCTGTACGC CAGCATCAAC
TCCTTCCACC AGTTGGAAGT GATCAACACC ACCAATAATG AGCACTACAC ATGGCCAATA
CAGACCGGCA AGCAACCGCT GATCTAG
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| Protein sequence | MSLKDSFSEE LRYLHELGND FAKDNPQLAR LLGNGASDPD VERLMEAFAF LTAKLRLKLE
DDLPELTHPM LQLLWPNYLR PLPSATIIQF SPIKQSLSQS QRIPKGSRLF SKPVDGVACE
FRTCTAVNVH PFEIDTVAAT QTLDSSVVSI GLQILVERPL NSLGCTSIDF YLSGDTRTAR
TLYLWISQYL KHVSVAIDGE ARRLPANSIT FPGFSPDDAM LPYPQNVFDG YRILQEYFAF
PQRFHFFSVT GLEKIWPAHD SARICLEFHF TRQLPDSLRV GRADFNLFCA PAVNLFQHSA
EPIDLSGEDA LVPLKPKGTE PHGYEIFSVD QVISTRTTTD GKIGEHLRTF RPFESFAHEI
EHIQGRTALY YRYQLEECLH GDGVMHRIAF VRADANSYIG ELETASIDLT CTNRDLPLAL
GIDDINVLTE LTPPLATYTN LCKPTRPCRP VLDGQLQWAL ISNMSLNYLS LLSVEPLKAV
IRAYDFMALH DIQQARTTRK RLEGMRDIHT QPMDWLIKGQ PIRGLHTRLK LDQTAFLCEG
DLYLFSCVLA HFFALYASIN SFHQLEVINT TNNEHYTWPI QTGKQPLI
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