| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3218 |
|---|
| Symbol | |
|---|
| ID | 5871003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3602753 |
|---|
| End bp | 3604486 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641548334 |
|---|
| Product | fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein |
|---|
| Protein accession | YP_001669446 |
|---|
| Protein GI | 167034215 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACCA CTGACGAGAC GCAACACCGC TTCGACCTGG TGGTACTGGG CAGCGGCGCC
GGTGGCTTTG CCGCTGCCGC CACGGCGGCC CGCCGTGGGC TGAAGGTACT GGTGGTGGAA
AAGGCCGAGC ACTTTGGCGG TACCTCGGCG ATATCTGGCG GTGCGGTGTG GCTATACGGC
ACCGATCAAG CCCGCGCCGC CGGAGCCAAG GACTCCCCCG AGGCCATGCG CACCTACCTC
AAGCAGGTGA TCGGCGACGG CTACGACCCT CTTCTGGGTA ACGCCTTCAT CGAACAAGGC
CACCAGGCGC TGCGCTGGCT GGAGCAGAAC ACCGAGTTGC GCTATGCCCT GCGCCCACAC
TCGCCCGACT ACTACCCCGA TGCCCCCGGT GCCACTCAGT TCGGTCGCGC GCTGGAAATG
GTCGAGTACG ATGGCAAGCA CCTCGGCGCA CGCTTCAAGG ACCTGCAGAT GCCCCCGCCC
GGCATGCTGC TGTTCGGCGG CATGATGGTC AACCGCGTGG ATATCCAGCA TTTCCTGAGC
ATTCGCCGCT CGCCCAGGTC GCTGTGGCAC TGCCTGAAAC TGATGGCGCG TTACGCGCGG
GACCGCCTGC AGCACCCGCG TGGCACGCGG CTTACCACCG GCAATGCATT GATCGCCCGC
CTCGCCACCA GCGCTTTTGC CAACGGCACG CAGCTTTGGT TGCGCAGCGA AGCCGTGGAG
TTGATCGTCG AGCGCGGCGT AGTCACTGGC GTAGTTGTAC AGCGCGAGGG CCGTCGTGTG
CGGGTATCTG CTCGTGGGGG CGTGGTGAGC GCAATGGGCG GGTTCGCTGC TGGCGCACTG
GCCGCCAACT ACAGACCGCC CCAAGAGGCG CCGCACCTGA CCATGTCACC GCCGGCCAAC
GACGGTGCCG CCCTGCGCCT TTGCCAGGCC GTGGCAGCAG CCGAGGGCGA GGGCCTGGCG
GCCAACTTCT TCTGGGCGCC GGTTTCCGAA CTGCGCCACG CCGGGGGTGA GCGTGAACGC
TTCCCGCACC TGGTCACCGA CCGCGCCAAA CCTGGCGTGA TTGCGGTCGA CCCGGCCGGG
CGGCGCTTCG TCAACGAATC CGACTCCTAC CACCATTTTG TGCAGACCAT GTTCGCCAAC
GGCATTGCCA GTTGCTGGCT GGTCTGCGAT GCCGAAGCGA TGAATCGCTA CGGGCTGGGT
CTGGCGCGGC CAAAGCCGGT GAACAACCAG GCGTTGATCG ACGCCGGCTA CTTGTACCGG
GCCGCAACAC CACAAGCCCT GGCCCAGGCC ATTGGCGTCG ACCCACAGGT GTTTGCGCAA
ACCCTCGAGC AGTTCAATGC CGATGCCCGC AATGGCATCG ACCGCGAGTT CGGCAAAGGC
AGCAACCGCT ACAACCGCTA CATGGGCGAC CCGCAACACA CGCCCAACCC CTGCCTGGCG
CCATTGAGCA GTGGGCCGTT CTACGCCATC CGCATCCACA CCGGCGACCT CGGCTCTGCC
CGCGGCCTGG TGACCAACGC CGATGCCAAC GTGTTGAACC GTAGCGGCCA GCCCATCACC
GGGCTGTATG CGGTCGGCAA CGACATGAAC TCATTGATGA AGGGGACCTA CCCCGGCCCC
GGCATCACCT TGGGCCCTGC CCTCACCTTC GGCTGGCTCG CTGCCAACCA CATCACCGCG
CGCCTGCAGG CGCCGACTGC CCACACGGAG ACCCCAGCAT GTACTACGAA CTGA
|
|---|
| Protein sequence | MATTDETQHR FDLVVLGSGA GGFAAAATAA RRGLKVLVVE KAEHFGGTSA ISGGAVWLYG
TDQARAAGAK DSPEAMRTYL KQVIGDGYDP LLGNAFIEQG HQALRWLEQN TELRYALRPH
SPDYYPDAPG ATQFGRALEM VEYDGKHLGA RFKDLQMPPP GMLLFGGMMV NRVDIQHFLS
IRRSPRSLWH CLKLMARYAR DRLQHPRGTR LTTGNALIAR LATSAFANGT QLWLRSEAVE
LIVERGVVTG VVVQREGRRV RVSARGGVVS AMGGFAAGAL AANYRPPQEA PHLTMSPPAN
DGAALRLCQA VAAAEGEGLA ANFFWAPVSE LRHAGGERER FPHLVTDRAK PGVIAVDPAG
RRFVNESDSY HHFVQTMFAN GIASCWLVCD AEAMNRYGLG LARPKPVNNQ ALIDAGYLYR
AATPQALAQA IGVDPQVFAQ TLEQFNADAR NGIDREFGKG SNRYNRYMGD PQHTPNPCLA
PLSSGPFYAI RIHTGDLGSA RGLVTNADAN VLNRSGQPIT GLYAVGNDMN SLMKGTYPGP
GITLGPALTF GWLAANHITA RLQAPTAHTE TPACTTN
|
|---|
| |