| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3217 |
|---|
| Symbol | |
|---|
| ID | 5871002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3601939 |
|---|
| End bp | 3602748 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641548333 |
|---|
| Product | shikimate dehydrogenase substrate binding subunit |
|---|
| Protein accession | YP_001669445 |
|---|
| Protein GI | 167034214 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGTG GTTCCACTGA ACTGGTCGCC ATCGTCGGTT CGCCCATCGC CCAGGTGAAG
TCCCCGGAAA ACTTCAACAC TTGGTTCACC CACAACAATT GCAACCTCGC CATGCTGCCC
ATCGACCTGC ATGAGGCAGC GTTGGACAGC TTTGCCGGCA CCCTGCGCGG CTGGCAGAAC
CTGCGCGGCT GTGTGGTCAC CGTGCCGTAC AAGCAGGCCC TGGCCAACCG CCTGGACGGC
CTGAGCGAAC GCGCAGCGGC CCTGGGCTCG GTCAATGTGA TACGTCGCGA GCGCGACGGG
CGCCTGCTGG GCGACAACGT GGACGGCGCA GGCTTCCTGG GCGCTGCGCG CAAGCATGGT
TTCGAGCCAG CGGGCAAGCG GGCCTTGGTG ATCGGTTGCG GCGGTGTTGG CAGTGCCATC
GCCTATGCAC TGGGCGAGGC AGGTATTGCC AGCATCACCC TCAGCGACCC CAGCACAGCG
CGCATGGGTG CGGTGTGCGA ATTGCTCGGC AGCGCCTTCC CCGGGCTTAC GATCAGCACG
CAGTTCAGTG GGCTGGAAGA TTTCGACCTG GTGGCCAACG CCTCGCCTGT CGGCATGGGC
AACAGTGCGG AACTGCCACT GTCCGCCGCC CTAGTGGCCA CTCTACAGCC CGACACCCTG
GTCGCCGACG TGGTCACTTC GCCCGAGATC ACCCCGTTGC TGAACCGCGC ACGCCAAGTA
GGCTGCGCGA TCCAGACCGG CCCGGAAATG GCCTTCGCCC AACTCGGCCA CCTTGGCGCC
TTCATGGGCG TAACGCCGCT GGAGATCTGA
|
|---|
| Protein sequence | MIRGSTELVA IVGSPIAQVK SPENFNTWFT HNNCNLAMLP IDLHEAALDS FAGTLRGWQN
LRGCVVTVPY KQALANRLDG LSERAAALGS VNVIRRERDG RLLGDNVDGA GFLGAARKHG
FEPAGKRALV IGCGGVGSAI AYALGEAGIA SITLSDPSTA RMGAVCELLG SAFPGLTIST
QFSGLEDFDL VANASPVGMG NSAELPLSAA LVATLQPDTL VADVVTSPEI TPLLNRARQV
GCAIQTGPEM AFAQLGHLGA FMGVTPLEI
|
|---|
| |