| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3133 |
|---|
| Symbol | |
|---|
| ID | 5870918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3509419 |
|---|
| End bp | 3510597 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641548249 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001669361 |
|---|
| Protein GI | 167034130 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.637765 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCAGC CTGCCCAACT TGCCTTGACC TGCCTGCTGG CCCTGGCCGC GACGTTGTCG
GCGCCCTTGG TGTGCGCTGC AGAACCGTTG CAGGTGCGCA TCGGCTACCT GGGCTATCGC
CCCGACCCCG GCCCACTGCT GTCCAACATC ATCCCCGAGC CTGCCGACGC CGGCCTGCAA
GGGGCGGAAC TGGCGATTGT CGACAGCAAC AGCACCGGGC GCTTCCTGAA ACAGCACTTC
CAGCTGACCA GCGCCACGGT CGACAGCCCC GAGGCCCTGC TGCAGGCCGC CAACGCCCAA
CATGACCAAG GCCTGCGCCT GTTCGTGGTG AACGCCCCAG CAGCCAGCCT GCGCGCGCTG
TCCGCCGCCC TGCCCGACAG CCTGCTGTTC AATGCCGGCA GCCCTGACGA CAGCCTGCGC
AGCAGCCAGT GCCTGGGCAA TGTGCTGCAC AGCCTGCCGG GCCGGGCCAT GCTGGCCGAT
GCCCTGGTGC AGTTCCTGGT GCTGCGCAAG TGGCAGCGGG CGCTGCTGGT GGTCGGCCAG
ACCGAGGACG ACAAAGCCTA CGCCGACGCC CTGCGCCGCG CACTGAAGCG TTTTGGTGCG
CAACTGGTCG CGGAAAAAAC CTGGACCTTC GACAACGACC AGCGCCGCAG CGCCCAGGCC
GACATGCCGT TGTTCACCCA AACCGCCGAA TACGACGTGG TGCTGGTGGC TGACGAACGC
GGCGACTTCG GCGAATACCT GCCCTACCAG ACCTGGTACC CGCGCCCGGT GGCCGGCACC
CAGGGCCTGA CCCCCACGGG CTGGCACAAG AGCGTGGAAA CCTTCGGTGC GGCCCAGCTG
CAAAAGCGCT TCGAGGCCCA GGCCGGGCGC TGGATGAACG ACCGCGACTT CGCCGCCTGG
ATGGCTGTGC GCAGCGTCGC CAGCGCGGCC AGCAAGCTGC GCCAGGCCGA ACCACGCGCG
CTGCAGCAAC TGCTGCTCAG CGAGCAGTTG CCGTTGGACG GCTTCAAGGG CCGCAAGCTC
AGTTACCGCC CATGGAACGG TGAACTGCGC CAGCCGATTG CGCTGGTGCA GCCGCGGGCC
CTGGTCAGCA CCTCGCCGCA GGAGGGCTTC CTGCATCCCT TCAATGAAAT GGACAGCCTG
GGCTACGACA AGCCCGAAGT GACGTGCAGC TACCCCTGA
|
|---|
| Protein sequence | MRQPAQLALT CLLALAATLS APLVCAAEPL QVRIGYLGYR PDPGPLLSNI IPEPADAGLQ
GAELAIVDSN STGRFLKQHF QLTSATVDSP EALLQAANAQ HDQGLRLFVV NAPAASLRAL
SAALPDSLLF NAGSPDDSLR SSQCLGNVLH SLPGRAMLAD ALVQFLVLRK WQRALLVVGQ
TEDDKAYADA LRRALKRFGA QLVAEKTWTF DNDQRRSAQA DMPLFTQTAE YDVVLVADER
GDFGEYLPYQ TWYPRPVAGT QGLTPTGWHK SVETFGAAQL QKRFEAQAGR WMNDRDFAAW
MAVRSVASAA SKLRQAEPRA LQQLLLSEQL PLDGFKGRKL SYRPWNGELR QPIALVQPRA
LVSTSPQEGF LHPFNEMDSL GYDKPEVTCS YP
|
|---|
| |