| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3129 |
|---|
| Symbol | |
|---|
| ID | 5870914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3504444 |
|---|
| End bp | 3506339 |
|---|
| Gene Length | 1896 bp |
|---|
| Protein Length | 631 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641548245 |
|---|
| Product | methanol/ethanol family PQQ-dependent dehydrogenase |
|---|
| Protein accession | YP_001669357 |
|---|
| Protein GI | 167034126 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4993] Glucose dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.957958 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.28425 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATAA GATCGCTACC CGCCCTTTCC CCTCTGGCCT TGAGCGTGCG CGTCCTGCTG
ATGGCCGGTA GCCTGGCCCT GGGCACTGTG GCAACAGCGG CCACCCCCTC TGCTGCACCT
GCCGGCAAGC ACGTCACCTG GGAAGACATC GCCAATGACC ACCTGACCAC CCAGGACGTG
CTGCAGTACG GCATGGGCAC CAACGCCCAG CGCTGGAGCC CGCTGGCCCA GGTCAACGAC
CAGAACGTGT TCAAGCTCAC GCCGGCCTGG TCCTACTCCT TCGGCGACGA GAAGCAGCGC
GGCCAGGAGT CCCAGGCCAT CGTCAGCGAC GGCGTGGTCT ACGTCACAGG CTCCTACTCA
CGGGTATTCG CCCTCGATGC CAAGACCGGC AAACGCCTGT GGACCTACAA CCATCGCCTG
CCCGACAACA TTCGCCCGTG CTGCGACGTG GTCAACCGCG GGGCAGCGAT CTACGGCGAC
AAGATTTACT TCGGCACCCT GGACGCGCGG GTCATCGCCC TGGACAAAAA CACCGGCAAA
GTGGTGTGGA ACAAGAAGTT CGGCGACCAC AGCGCCGGCT ACACCATGAC CGGCGCACCG
GTGCTGATCA AGGACAAGAC CAGCGGCAAG GTTCTGCTGA TCCACGGCAG CTCCGGCGAT
GAATTCGGCG TGGTCGGCCA GCTGTTCGCG CGCGACCCAG ACACCGGCGA AGAGGTGTGG
ATGCGGCCTT TCGTCGAAGG CCACATGGGC CGCCTGAACG GCAAGGACAG CACCCCGACC
GGCGATGTCA AGGCGCCGTC CTGGCCAGAC GACCCCACCA CCGAAACCGG CAAGGTCGAG
GCCTGGAGCC ACGGCGGCGG CGCCCCTTGG CAAAGCGCCA GCTTCGACCC CGAGACCAAC
ACCATCATCG TTGGCGCGGG TAACCCCGGC CCGTGGAATA CCTGGGCGCG CACGTCGAAG
GACGGCAACC CGCATGACTT CGACAGCCTG TACACCTCCG GCCAGGTCGG CGTCGACCCG
AGCACCGGCG AGGTCAAATG GTTCTACCAG CACACCCCCA ACGATGCCTG GGACTTCTCC
GGCAACAACG AGCTGGTGCT GTTCGACTAC AAAGATAAGG ACGGCAAAGT GGTCAAGGCC
ACCGCCCACG CCGACCGCAA CGGCTTCTTC TACGTGGTAG ACCGCAACAA CGGCAAGCTG
CAGAACGCCT TCCCCTTCGT CGACAACATC ACCTGGGCCA GCCACATCGA CCTGAAGACC
GGGCGCCCGG TGGAAAACCC CGGCCAACGC CCGGCCAAGC CGTTGCCGGG TGAAACCAAG
GGCAAGCCGG TGGAAGTCTC GCCACCGTTC CTTGGCGGCA AAAACTGGAA CCCCATGGCC
TACAGCCAAG ACACTGGCCT GTTCTACATC CCCGGCAACC AGTGGAAAGA GGAATACTGG
ACCGAGGAAG TGAACTACAA GAAAGGCTCG GCCTACCTGG GCATGGGCTT CCGTATCAAG
CGCATGTACG ACGACCACGT CGGCACCTTG CGCGCCATGG ACCCGACTAC CGGCAAGCTG
GTGTGGGAAC ACAAGGAGCA CCTGCCGCTG TGGGCAGGCG TGCTGGCCAC CAAGGGCAAC
CTGGTATTCA CCGGCACGGG TGACGGTTTC TTCAAGGCGT TCGACGCCAA GACGGGCAAG
GAGCTGTGGA AGTTCCAGAC CGGCAGCGGC ATCGTTTCGC CGCCCATCAC CTGGGAGCAG
GATGGCGAGC AGTACATCGG CGTGACCGTG GGCTATGGCG GCGCGGTGCC GCTGTGGGGC
GGCGACATGG CCGAGCTGAC CAAACCCGTG GCGCAGGGCG GCTCGTTCTG GGTGTTCAAG
ATCCCTAGCT GGGACACCAA GACTGCACAG CGTTGA
|
|---|
| Protein sequence | MTIRSLPALS PLALSVRVLL MAGSLALGTV ATAATPSAAP AGKHVTWEDI ANDHLTTQDV
LQYGMGTNAQ RWSPLAQVND QNVFKLTPAW SYSFGDEKQR GQESQAIVSD GVVYVTGSYS
RVFALDAKTG KRLWTYNHRL PDNIRPCCDV VNRGAAIYGD KIYFGTLDAR VIALDKNTGK
VVWNKKFGDH SAGYTMTGAP VLIKDKTSGK VLLIHGSSGD EFGVVGQLFA RDPDTGEEVW
MRPFVEGHMG RLNGKDSTPT GDVKAPSWPD DPTTETGKVE AWSHGGGAPW QSASFDPETN
TIIVGAGNPG PWNTWARTSK DGNPHDFDSL YTSGQVGVDP STGEVKWFYQ HTPNDAWDFS
GNNELVLFDY KDKDGKVVKA TAHADRNGFF YVVDRNNGKL QNAFPFVDNI TWASHIDLKT
GRPVENPGQR PAKPLPGETK GKPVEVSPPF LGGKNWNPMA YSQDTGLFYI PGNQWKEEYW
TEEVNYKKGS AYLGMGFRIK RMYDDHVGTL RAMDPTTGKL VWEHKEHLPL WAGVLATKGN
LVFTGTGDGF FKAFDAKTGK ELWKFQTGSG IVSPPITWEQ DGEQYIGVTV GYGGAVPLWG
GDMAELTKPV AQGGSFWVFK IPSWDTKTAQ R
|
|---|
| |