| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3118 |
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| Symbol | |
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| ID | 5870903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3490164 |
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| End bp | 3493349 |
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| Gene Length | 3186 bp |
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| Protein Length | 1061 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641548234 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_001669346 |
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| Protein GI | 167034115 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.674969 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACA ACCCGCGCAT CACGTTCATC AGCGCTGGCG CTGGCAGCGG CAAGACCTAT
CGGCTCACGG AGCTTTTGTA CCAGGAGCTG ACCAGCCAAC AGGTGCAGCC AGAGGGCATC
ATCGCCACCA CGTTCACCCG CAAAGCCGCT GCCGAGCTGC GCGAGCGCGT GCGCAGCCAC
CTGCTCGACA AGGGGCAGGT CGGCCTGGCC AGCGCTATGG GCCAGGCACG CATCGGTACG
GTAAACAGCC TGTGTGGCCA GTTGCTCGAG CACTTCGCCT TTGAAGCCGG CATGCCACCG
CAACAGCGCG TGCTGGAAGA AGAGCAGGCG AAGGTGCTGC TCAACCAGGC CGTCGATAGC
GTCCTTGACG GTACGCGCAT GGAGGCGTTC CTTGCCATCA GTCGGCGCCT GGGGCTGGAG
GTTACCCTGC AGCAGAGCGA CCTTCCGAGT GATAGCTGGC AAGACGCACT ACGCCGACTG
CTGGATCAGC TGCGCAGCAA TGACATTGAC CTTGAGCGCG CGCGCGACTT CGCTGCGCGT
AACGCCCAGG ACCTGCTTGC GCACTTCCCC AGCATGACCA GCAGCGATCT GGACGCTGAG
CTGCTGCGCA CCCTTCCCGA TGTGCTTGCA CTGCTGCAGG ACGCCAACAG CAAAGTCAAG
CTGACAGCAA CGTACATCAC CTTGCTCAAG GACTTCCAGC GTGAGCTGCA GCAAGGCAAT
GCCCGCTGGA GCGACTGGGC AAAGCTGGCC AAAACGGCAC CGGAAGCCAA GCTGACGCCG
TTGGTGGCCG GCGTGACCGA AAGGGTACAG CGCTATGCCG AGCACCCGCG CCTGCACGCC
GATCTGAGGG AATACCTGGA CCAGATATTC AACCTCGCCA TCGATGCCTT GCAACTGTAC
AGCCGTAACA AGATCGAGCT GGGCGTGCTG GACTTCGCCG ACCAGGAACA TGCGTTGCTC
AGATTGCTGG ACAACCCCGC GGTCATCGAG GTGCTGGAGC AAGAACTGGA CCTGGTCATG
GTTGACGAGT TCCAGGACAC CAGCCCTATG CAGTTGGCGA TTTTCCTGAA GCTTGCCCGC
ATCGCCAAGC GGGTTTACTG GGTAGGCGAT ATCAAACAGG CGATCTACGG TTTTCGTGGC
AGCGACTGCG CCTTGATGCA AGCCATCCTT GGCGCTTTGC CTGGCATGGG CGGGGTCAAA
GAGGTATTGC CCAAATCCTG GCGCTCGCGC CCTGAGCTTG TCGAGTTGAC CAACGAAGTG
TTCACCCAGG CGTTCAGCAA CAGCCTGTCC GCCGACGAGG TCCGGCTCAC GCCTACTCGA
CAGGACCCGC TTGGCGGGCC CGCCTTTGCC AACTGGATAC TCGATGGCAG CAATGCCGAG
CAGCAGACCT GTGCACTTGC CGAAGGGATA GGGCAACTGC TCGAAAGCCG CTACCAGGTG
TTCGACAAGA CCACCCAGCA GGCCCGTGAC CTGCAGGCTG GCGATATCAC CGTGCTTTGC
TACTCCCACA GCAATGTGGC CAAGGTAGCG GCGGCCCTGG CCGCCGCAGG CCTGCCCTGC
TCCACGGCCC AGCCCGGGCT GCTGGCAACG CCAGAAGCGA CACTGGCGCT GGCGTGCTTG
CGCCGGTTGA ATGACCCGAC GGATACCCTG GCCACCGCCC AGATCGTCTC CATGACCAGC
GCCGAGGAAC CAGAAAGCTG GGTTGCAGAG CGCTTGCACT ATCTGCACGC CGGGCACCCG
CAAGGCCAAT GGCGAGAACA AACAGTCGAT GCGCATGCAG CACATCCGCT GGTCGCCGAA
CTGGCACGGC TACGTGCCGA CCTGCCATTG CTGACGCCGG TCGAGGCGCT GCAGCGCTTG
ATCGCCGAAT GCGACTTGGC CCGTTGCGTA ACGGGCTGGT CGACCACGCC GGCACAGGCG
CAGAAGCGCC TGGCCAACCT GGACGCGTTG CTTGAACTGG CGCAACGCTA CCAAGACCTC
TGTCGCAATG GGCTGGGGGC GGCATCGATT TCCGGGCTGG TGCTCTGGTT GGGGCAAACC
GCCGGCGCGG GCAATGATGC GCTGGCAACC CCGGCCCTGG ATGCGGTCCG GGTGATGACT
CACCACGCCA GTAAGGGCCT GGAGTGGCCC GTGGTCATCC TGATGGACCT GGCGCGGGAC
GTTGGCGAGC GGCTGTGGTC GGTTTCGGCG CAGTCCGACA GTGCCCTGGA CCCGAATGAT
CCATTGCGCG ACCGCTTTAT CCGTTACTGG CCGTGGCCAC TGGGCAAGCA GAAAAACGTG
CCGCTGGCGG ACACCATCGG CAAAACCCCC GCTGCCAAGG CGTGCCGCGA TGAGGCTGTC
GAGGAAGCCA AGCGCCTGCT GTACGTGAGC ATGACCCGCG CCCGTGATTT TCTGGTGATT
GCTCGTTCCA GCAGGCGGTT GACTGGGCCG TGGCTAGATT GCGTCCAGGC TCCATGGCTG
ACGACCGAAG CAGGCACACA TGAATTGCAG CTGAAAAGTG GAACAACCGT GCGCGTCGAG
CATCGCACGC TTGGCGCCGG CAGTGCGCCA GTCATTGCAA CAGCCACCAC CAACCAGCTG
CACTGGTTTG CGTCCCCCGA CAGCGTTACA CCTCGATTGC CACTTGGGGT GCAGCCTTCG
GCCACCCAGG CCAGCGCGCT TGCTGGTGCA CAGGAAACCT GCCGTATCGG TAGCCGCATC
ACCTTGCAAG GCAACCCGGA CATGAGCGCA GTAGGCACTG CGATTCATGC CAGCCTTGGC
CTGTCGTTCA GCGACCCGGA GCGCCCGATA AGCCAGGACG AGGTCAACCG ATTGCTGCAG
GGCCTGGACG TACTCGAACA CGTCGATGCC CGCCAGGTAC TGGCCCAGGT GACGGCCTTG
CATGCCTGGA TTGCAAGTCG CTGGCCCCAC GCCGACGCGG TGGCTGAATA CCCGGTACAA
CAGCTGCTGG ATGCCGGCCA GGTACTGGAT GGCCGCATTG ACCTGCTGTT GGCCACCCCA
GAGGGTTGGG TGTTGATCGA CCACAAGTCC AACCCGGCAC CCGAGGCGCA ATGGCAGCGG
CTGGCGGCAA CGCACGCGGG GCAGTTGCAG GCCTACGCCA AGGCCGTGGA GGCCGCATCA
GGCAAGCCGG TGACAGAGGC CTGGCTGTTC TTGCCCGTAG CTGCCGGTGC CGTTCGCGTG
TTCTGA
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| Protein sequence | MSDNPRITFI SAGAGSGKTY RLTELLYQEL TSQQVQPEGI IATTFTRKAA AELRERVRSH
LLDKGQVGLA SAMGQARIGT VNSLCGQLLE HFAFEAGMPP QQRVLEEEQA KVLLNQAVDS
VLDGTRMEAF LAISRRLGLE VTLQQSDLPS DSWQDALRRL LDQLRSNDID LERARDFAAR
NAQDLLAHFP SMTSSDLDAE LLRTLPDVLA LLQDANSKVK LTATYITLLK DFQRELQQGN
ARWSDWAKLA KTAPEAKLTP LVAGVTERVQ RYAEHPRLHA DLREYLDQIF NLAIDALQLY
SRNKIELGVL DFADQEHALL RLLDNPAVIE VLEQELDLVM VDEFQDTSPM QLAIFLKLAR
IAKRVYWVGD IKQAIYGFRG SDCALMQAIL GALPGMGGVK EVLPKSWRSR PELVELTNEV
FTQAFSNSLS ADEVRLTPTR QDPLGGPAFA NWILDGSNAE QQTCALAEGI GQLLESRYQV
FDKTTQQARD LQAGDITVLC YSHSNVAKVA AALAAAGLPC STAQPGLLAT PEATLALACL
RRLNDPTDTL ATAQIVSMTS AEEPESWVAE RLHYLHAGHP QGQWREQTVD AHAAHPLVAE
LARLRADLPL LTPVEALQRL IAECDLARCV TGWSTTPAQA QKRLANLDAL LELAQRYQDL
CRNGLGAASI SGLVLWLGQT AGAGNDALAT PALDAVRVMT HHASKGLEWP VVILMDLARD
VGERLWSVSA QSDSALDPND PLRDRFIRYW PWPLGKQKNV PLADTIGKTP AAKACRDEAV
EEAKRLLYVS MTRARDFLVI ARSSRRLTGP WLDCVQAPWL TTEAGTHELQ LKSGTTVRVE
HRTLGAGSAP VIATATTNQL HWFASPDSVT PRLPLGVQPS ATQASALAGA QETCRIGSRI
TLQGNPDMSA VGTAIHASLG LSFSDPERPI SQDEVNRLLQ GLDVLEHVDA RQVLAQVTAL
HAWIASRWPH ADAVAEYPVQ QLLDAGQVLD GRIDLLLATP EGWVLIDHKS NPAPEAQWQR
LAATHAGQLQ AYAKAVEAAS GKPVTEAWLF LPVAAGAVRV F
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