| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3099 |
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| Symbol | |
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| ID | 5870884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 3465833 |
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| End bp | 3467521 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641548215 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001669327 |
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| Protein GI | 167034096 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGC GATACGACTA CATCATCATC GGTGCGGGCT CTGCCGGCTG CGTGTTGGCC
AACCGCCTCA GCGAAGACGC CGGTACCTCG GTGCTGGTAC TGGAGTTCGG TGGCAGCGAC
CGCAGCGTGC TGATCCAGAT GCCCAGTGCG TTCTCCTTGC CGATGAACAC CAAGAAATAC
AACTGGCACT ACGAGACCGT GGCCGAGCCG CATCTGGACA ACCGGCGCCT GCATTGCCCT
CGGGGCAAGG TGCTGGGCGG CTCGTCGTCG ATCAATGGCC TGGTCTACAT CCGCGGCCAT
GCCTGTGATT TCGATGAGTG GGAAAGCCTC GGCGCGAAGA ACTGGAGCTA CCGCAATTGC
CTGCCGTACT TCAAACGTGC CGAGCAGTAC AAGTTCGGTG GCGACGACTA CCGGGGCGGC
GCCGGGCCGC TGTCGACCAA CAACGGCAAC AATATGCAGA ACCCGCTGTA TGGTGCCTGG
GTCGAGGCGG GCGCCGAAGC CGGCTACATC AAGACCGATG ACTGCAACGG TTACATGCAG
GAAGGCTTTG GTGCCATGCA CATGACGGTG AAGGACGGTG TGCGCTGGTC CACCGCCAAT
GCCTACCTGC GCCCGGCGAT GACCCGGCCG AACCTGACCG TGATCACCCA TGCCATGACC
CGGCGCATCC TGCTCGATGG CAAGCGGGCG GTGGGCGTGG AATATGACCA TGGCGGGCAG
ACGCACAAGG TCATGTGCAA CCGGGAAGTG CTGGTGGCGT CCGGCCCGAT CGGCTCACCG
CATTTACTGC AGCGCTCTGG CATCGGCCCA GCGGCGGTGC TGAAAAGCGC CGGCATTGAG
GTGCGCCACG ACCTGCCGGG GGTGGGCGAG AACCTGCAGG ACCACTCGGA AATCTACATC
CAGTATGCGT GCAAGCAACC GGTGACCCTC AACGGCAAGA TGAACCTGCT GGGCAAGGCC
ATGATCGGCT TGCGCTGGCT GCTGTTCAAG GACGGGCTGG GGGCCAGCAA CCACTTCGAA
GCCGGCGGTT TCATCCGCTC GTCCAAGGGC TTGCGCTGGC CGGACATCCA GTTCCACTTC
CTGCCGGCGG CCATGCGCTA CGACGGCGAC AAACCGTTCA AAGGCCATGG TTTCATGGTG
CTGACCGGGC CCAACAAGCC CAAGAGCCGA GGCCATGTGC GGGCGTTGTC GGCCGACCCG
TACCAGCATC CGCAAATCCG CTTCAACTAC CTGGAGAGCG AAGAGGACCG CGAAGGTTTC
CGTCGGTGCG TACGGCTGAC CCGCGAGATC ATCGCCCAGC CGGCCATGGA CCGCTACCGT
GGGGAGGAGC TGGCGCCCGG GCCGCAGGTG CAGACCGACG AAGAAATCGA CGCCTTCGTG
CGCGCGAACA TGGAAAGCAC CATGCACCCG TGCGGCTCGT GTCGTATGGG TGAGGATGAG
ATGGCGGTGG TCGATTCAAT GCTGCGCGTG CGTGGATTGC AGGGGCTGCG GGTGATCGAC
TCGTCGGTGT TCCCGAGCGA GCCCAACGGC AACCTCAACG CGCCGACCAT CATGCTGGCC
GAGCGTGCCG CCGACCTGGT GCGCGGGCGT CAGCCGCTGG CGCCGGTCGA TGTGCCGGTG
GGCCTGGTGG GGGGCTGGGA GGAGGAGCAG CGTAGCCGCA AGCCCGTGCG GGAGATGCCT
ATCCGTTAA
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| Protein sequence | MTKRYDYIII GAGSAGCVLA NRLSEDAGTS VLVLEFGGSD RSVLIQMPSA FSLPMNTKKY
NWHYETVAEP HLDNRRLHCP RGKVLGGSSS INGLVYIRGH ACDFDEWESL GAKNWSYRNC
LPYFKRAEQY KFGGDDYRGG AGPLSTNNGN NMQNPLYGAW VEAGAEAGYI KTDDCNGYMQ
EGFGAMHMTV KDGVRWSTAN AYLRPAMTRP NLTVITHAMT RRILLDGKRA VGVEYDHGGQ
THKVMCNREV LVASGPIGSP HLLQRSGIGP AAVLKSAGIE VRHDLPGVGE NLQDHSEIYI
QYACKQPVTL NGKMNLLGKA MIGLRWLLFK DGLGASNHFE AGGFIRSSKG LRWPDIQFHF
LPAAMRYDGD KPFKGHGFMV LTGPNKPKSR GHVRALSADP YQHPQIRFNY LESEEDREGF
RRCVRLTREI IAQPAMDRYR GEELAPGPQV QTDEEIDAFV RANMESTMHP CGSCRMGEDE
MAVVDSMLRV RGLQGLRVID SSVFPSEPNG NLNAPTIMLA ERAADLVRGR QPLAPVDVPV
GLVGGWEEEQ RSRKPVREMP IR
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