| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3083 |
|---|
| Symbol | |
|---|
| ID | 5870868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3446718 |
|---|
| End bp | 3447902 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641548199 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_001669311 |
|---|
| Protein GI | 167034080 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase |
|---|
| TIGRFAM ID | [TIGR01891] amidohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.684536 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTATTT TGCACAGCAA TCAACCCCGG CACTCGGCAG CAGCGCTGGA CGAGTTCGTC
ATGCTTCGCC GGCAGATCCA CGCCGCGCCG GAGCTTGGTG GCGACACCCC CGATACGGCG
GCACTGGTGG CCGACAAGCT GCAGGCCTTG GGCTATGTAG TGCATCGCAA TGTGGGCGGG
CATGGTGTGG TCGGGGTGCT CAAGGTTGGC GACAGCCCGC GCAGTGTGGG CCTGCGGGCA
GACATGGACG CATTGCCCAT GAGCGAAAAG AATCCCTTTG CGCATGCCAG CAAAATCCCT
GGGCGTATGC ATGCCTGCGG CCATGATGGG CATACCGCGA TCCTGCTGGC AGCCGCTGCC
CAGCTGGCGG CAACGCGCAA CTTCAACGGC ACGCTTAACG TGATCTTCCA GCCGGATGAA
GAAGGGCTGG CCGGCGCCAA GGCGATGATC GACGACGGCC TGTTCGAGCG CTTCCCGTGT
GACTCGGTAT ATGCGCTGCA CAACATGCCC GGCATGCCGG TGGGTACTTG CGTGGTGCAG
GCGGGGCCAA CCATGGCGTC GTCCGAGCGT GTCAGCATTC GAATCACCGG CAAAGGCGGG
CATGGTGCGA TGCCGGAGCT GTCGGTAGAC CCGGTGATGG CGTTGAACAG CCTGATCAGT
GGCATCCAGA CCATCAAGTC GCGCAACCTG AGCGTGGAAG AGTATGCGGT CATCAGCATC
GGCATGATCC AGGCTGGCAC CGTTTACAAC ATCATCCCCG ATGAGGCCTG CATGCTGCTG
AGTGTGCGCA CCGACACGGC CGAGACGCAG CAGAAGATCA ACAGCCGCAT TGACGCCCTG
GCCAAGGGGC ACGCCGCAAG CTTTGGCGTG GAGATCGAGG TGCAATTCAC CCAACTGGCG
CCCGCATTGT GCAACAGCGA TCACGAAAGC GCGTTGTTGC GTGAAAGCCT GCGGCCGTTG
TTCGTTGAAG GCGCGTTGCT GGACAAAATG CCGAAGAAGG TCATGGGCAC CGAAGACTTC
GCCTACATGC TGCAGGCACG GCCTGGCTGC TACTTCATGC TGGGTAATGG CACCGGCGAG
TTTCATGGTT GCTCGGTGCA CAACCCTCAT TATGATTTCA ACGATGCGTT GGTGAAGGTG
GGCGCCGATT GTTGGGTGAA GTGGGTCCAG GACTATTTGC GCTGA
|
|---|
| Protein sequence | MGILHSNQPR HSAAALDEFV MLRRQIHAAP ELGGDTPDTA ALVADKLQAL GYVVHRNVGG
HGVVGVLKVG DSPRSVGLRA DMDALPMSEK NPFAHASKIP GRMHACGHDG HTAILLAAAA
QLAATRNFNG TLNVIFQPDE EGLAGAKAMI DDGLFERFPC DSVYALHNMP GMPVGTCVVQ
AGPTMASSER VSIRITGKGG HGAMPELSVD PVMALNSLIS GIQTIKSRNL SVEEYAVISI
GMIQAGTVYN IIPDEACMLL SVRTDTAETQ QKINSRIDAL AKGHAASFGV EIEVQFTQLA
PALCNSDHES ALLRESLRPL FVEGALLDKM PKKVMGTEDF AYMLQARPGC YFMLGNGTGE
FHGCSVHNPH YDFNDALVKV GADCWVKWVQ DYLR
|
|---|
| |