| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3064 |
|---|
| Symbol | |
|---|
| ID | 5870849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3420060 |
|---|
| End bp | 3420599 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641548180 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_001669292 |
|---|
| Protein GI | 167034061 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.26917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCAGGCGT TGCTGCTGCA AGGGCTGACC GGCGATGCGG CGGCCTATCG GATGTTCCTG
GCGGCGTTGG CCGTGCACGT GCGCAGTTTT TTGTCACGGC GCCTTGCTCA ACGCCCCTGC
GAAGTCGAAG ACCTGCTGCA AGAGGTGTTG TTGGCCGTGC ACAACGCCCG CCACACCTAC
CAGGCGCAGC AACCGCTGAC CGCCTGGGTG CAGGCCATTG CCCGCTATAA ACTGGCGGAC
CACTATCGCA GTTACGCCCG CCACGATGCG TTGCACGAAG GGCTGGAGGA TGACAGCGAC
CTGTTTGCCG CCAGCGAGCA AGAGGCGGCT CAAGCCACTC GGGACCTGGC CAAGCTGTTG
GCGCAATTGC CAGAGCGCCA GCGCTTGCCC ATCGTCCATG TCAAGCTGGA GGGGCTTTCG
GTGGAAGAAA CCGCGCGCAT GACCGGCCTG TCCAGCTCGG CTGTGAAAGT GGGCATTCAC
CGGGGCCTGA AGGCATTGGC CAAGCTGATG GGAGGCAAGG GCGACGATGA AGACCGATGA
|
|---|
| Protein sequence | MQALLLQGLT GDAAAYRMFL AALAVHVRSF LSRRLAQRPC EVEDLLQEVL LAVHNARHTY
QAQQPLTAWV QAIARYKLAD HYRSYARHDA LHEGLEDDSD LFAASEQEAA QATRDLAKLL
AQLPERQRLP IVHVKLEGLS VEETARMTGL SSSAVKVGIH RGLKALAKLM GGKGDDEDR
|
|---|
| |