| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3042 |
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| Symbol | |
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| ID | 5870827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3390080 |
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| End bp | 3391543 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641548158 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001669270 |
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| Protein GI | 167034039 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG0845] Membrane-fusion protein
[COG5569] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGTA CGTCTATCGG TCTGATCGCA GCCGTTGCAT TGGCTCTGGG TGGCGGTGCG
GGCTATTGGT TGGCAGCACG CGGGCAAAGT GCCAAGGCGC CGAGTTCAGA GGAGCAAAAG
GCACTTTACT GGTACGACCC GATGTACCCG CAGCAACACT TTTCCGCACC AGGCAAGTCG
CCCTTCATGG ATATGCAGCT GGTGCCGAAA TACGCGGGAG GCACCCCGGA TGACACACGG
CCCGCTGTGC AGATTACACC GGGTATCCAG CAGAACCTTG GGGTCAGGCT GGCGACAGTT
ACCCAGGGTC GCCTTGAGCG CACACTGCAG GTCAGCGGTG TACTGGCCTT CGACGAGCGC
GACTTCAGTG TGCTGCAAGC GCGAACCGCA GGGTACGTCG AACGCACTTA CGGGCGCGCC
ACAGGTGATG CAGTGACCAA GGGGGCACCG CTGGCCGATG TACTTGCGCC AGAATGGGTA
GGGTTGCAAG AAGAGTTTCT GGCGCTGCGT CGTTCGGGTG ATGCCGGCCT GCAGGCAGCC
GCCCGCCAGC GCCTGTTGCT GGCGGGAATG CCGGCGACGT TGATTGACCG GGTCGCACGC
AGCGGCAAGG TGCAGGCCCT GGTGACATTG GTTGCCCCCA CCGCCGGTGT CATCCAGGCG
CTGGAGCTAC GCCCAGGCAT GACCGTACTA CCTGGCGCTA CCCTGGCGCG CATCAACGGT
GTGACCAACG TCTGGCTTGA GGCAGCAGTA CCTGAAGCTC AGGCTCAGGG CTTGCGTGAA
GGCTTGGCAG TGCAAGCCGA ACTGCCCGCC TATCCCGGCC ATGCATTGAC CGGCAAGCTG
ACAGCGCTGC TGGCTGATGC GGACCTGCAA AGCCGTACCT TGCGGCTGCG CATCGAGCTG
CCCAACCTCG AGGGTCGATT GCGCCCTGGC ATGACCGCCC AGGTCACCCT GCATCCGGTT
GGGCAAGCCG ATGACAGCTT GCTGATACCT GCCGAGGCCG TGATCCGTAC CGGTAAACGC
AATGTGGTGA TGCTTGCCGA AGATCAAAGC CACTTCCGCC CGATCGAAGT GGTGCTGGGC
CAGGAAAGCG GCGGCCAGGT CGCCGTGCTG CAAGGGCTGC AGGCAGGCCA GCGGGTAGTG
GCGTCGGGGC AATTTCTAAT TGACTCCGAG GCCAGCCTCA AGGGCATCGA GGCTGCAACT
GCGCAAGAGA CCCCACTGGT ACCTGCACAA CCGCCACTGC ACGAGGCAGA CGGGCAAATT
GTGCAGATAG ACGGCAAGCA GCTCACCATC GCCCATGGCC CTTTCATCAC CTTGGGCATG
CCTGGAATGA CCATGACCTT CCCGGTGGCC GACTCCGTGA TGCTCGCCGG GCTGAAAGTG
GGTAGTCGCA TTCACTTTGG TATCCGCGAA CGTGACGAAG GCATGGTGAT CGAGCAGATC
GGTGCGCAGG AGAGTCAGCC ATGA
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| Protein sequence | MKSTSIGLIA AVALALGGGA GYWLAARGQS AKAPSSEEQK ALYWYDPMYP QQHFSAPGKS
PFMDMQLVPK YAGGTPDDTR PAVQITPGIQ QNLGVRLATV TQGRLERTLQ VSGVLAFDER
DFSVLQARTA GYVERTYGRA TGDAVTKGAP LADVLAPEWV GLQEEFLALR RSGDAGLQAA
ARQRLLLAGM PATLIDRVAR SGKVQALVTL VAPTAGVIQA LELRPGMTVL PGATLARING
VTNVWLEAAV PEAQAQGLRE GLAVQAELPA YPGHALTGKL TALLADADLQ SRTLRLRIEL
PNLEGRLRPG MTAQVTLHPV GQADDSLLIP AEAVIRTGKR NVVMLAEDQS HFRPIEVVLG
QESGGQVAVL QGLQAGQRVV ASGQFLIDSE ASLKGIEAAT AQETPLVPAQ PPLHEADGQI
VQIDGKQLTI AHGPFITLGM PGMTMTFPVA DSVMLAGLKV GSRIHFGIRE RDEGMVIEQI
GAQESQP
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