| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3020 |
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| Symbol | |
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| ID | 5870805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3367068 |
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| End bp | 3368729 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641548136 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001669248 |
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| Protein GI | 167034017 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.754568 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGGGC ATGAATACGA CTATGTGATC ATTGGTGCCG GCTCGGCCGG CTGCGTGCTG
GCCAAGCGCT TGGGAGAGAA CCCGGCCCTG CGCATCCTGG TGCTGGAGTC CGGCCCGCCG
GACGCCAGCT GGACCATCGA CATGCCCTCG GCAGTGGGCA TCGTGGTAGG CGGCACCCGC
TTCAACTGGA GCTACACCAG CGAACCGGAG CCGGGCCTGG ACGGCCGACG CATCGGCACA
CCACGCGGGC GCACCCTGGG CGGCTCGTCG TCGATCAACG GCATGGTCTA CATTCGTGGC
CATGCCCGCG ACTACGACGG CTGGGCTGCA CAAGGCTGCG AAGGCTGGAG CTATCGGGAG
GTGCTGCCCT ACTTCATGCG GGCGCAAAAC CATCGGGACG GCGCCAACAC CTACCGCGGC
GCAACCGGGC TGCTTCACGT CACACCAGGC GATACCTCGC CGCCACTGTG CCAGGCCTTC
ATCGAGGCCG GCCAGCAAGC CGGCTATGGC GTGAGCAGCG ACCTCAATGG CCACCGCCAG
GAAGGCTTTG GCCCGGTCGA CCGCACCACC CGCGACGGCA AGCGCTGGAG CACCGCGCGC
GGCTACCTGG CTGAAGCACT CAAAGGCGGC AACGTCACCA TCGCCACCTC GGCGCTGAGC
CGGCGGATTC TCTTCGACGG CGAACAAGCC TACGGGGTGG AGTTCGAAAT GGACGGCGTG
GTGCACCAGG TGCGTGTGCG CCAAGAGGTG CTACTGAGTG CTGGCGCCAT CAACTCACCG
CAACTGCTGA TGCTTTCTGG CGTCGGCCCG GCCCAGCATC TGCGGCGCCT GGGCATCCCC
CTGGTACGCG ACCTGCCGGG AGTAGGCCAG CGCCTGAACG ACCATCCCGA TACCGTCGTG
CAGTACCGCT GCAAGCAGCC GGTGTCGCTC TACCCCTGGA CACGTGCACC GGGCAAATGG
CTGATCGGCG CGCGCTGGTT CGCCAGCCAC GATGGCCTGG CGGCTAGCAA CCATTTCGAG
GCGGGCGCGT TCATCCGCTC GCGGGCCGGG GTGGAGTTTC CCGACTTGCA ACTGACGTTC
ATGCCGCTGG CGGTCCAGCC AGGCAGCGTC GACCTGGTGC CCGAGCACGC CTTCCAGGTG
CACATCGACC TGATGCGCCC CACCAGCCTG GGCAGCGTCA GCCTGGTCAG CACCGATCCG
CACCAGGCGC CGCGCATCCT CTTCAACTAC CTGACCACCG AGCGCGACCG CGCCGACATG
CGTGCAGGCG CCCGCCTGGT ACGCGAGATC CTCGCCCAGC CGGCCATGCG CGCCTATGCC
GGTGACGAGC TGGTACCCGG TGCCGACCAG GTGAGCGATG CGCAGCTCGA CGCTTGGGCG
CGACGCATCA CCGAGACTGG CTACCACGCC AGCGGCACCT GCAAGATGGG CCCGCCCAGC
GACCCCGAAG CAGTGGTCGA CCCACAATTG CGCGTGCACG GTCTGCGCGG GCTGCGGGTG
GTCGATGCCT CGATCATGCC GCAGATCGTC AGCGGCAACA CCAACGCGCC CACGGTGATG
ATCGCCGAGA AGGCCAGCGA CCTGATCCGT GGCCTCACCG CGCTTACCGC AAGCGATGCA
CCTGTGTGGG TTCACCCACG CTGGCGCGAA TGCCAGCGTT GA
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| Protein sequence | MLGHEYDYVI IGAGSAGCVL AKRLGENPAL RILVLESGPP DASWTIDMPS AVGIVVGGTR
FNWSYTSEPE PGLDGRRIGT PRGRTLGGSS SINGMVYIRG HARDYDGWAA QGCEGWSYRE
VLPYFMRAQN HRDGANTYRG ATGLLHVTPG DTSPPLCQAF IEAGQQAGYG VSSDLNGHRQ
EGFGPVDRTT RDGKRWSTAR GYLAEALKGG NVTIATSALS RRILFDGEQA YGVEFEMDGV
VHQVRVRQEV LLSAGAINSP QLLMLSGVGP AQHLRRLGIP LVRDLPGVGQ RLNDHPDTVV
QYRCKQPVSL YPWTRAPGKW LIGARWFASH DGLAASNHFE AGAFIRSRAG VEFPDLQLTF
MPLAVQPGSV DLVPEHAFQV HIDLMRPTSL GSVSLVSTDP HQAPRILFNY LTTERDRADM
RAGARLVREI LAQPAMRAYA GDELVPGADQ VSDAQLDAWA RRITETGYHA SGTCKMGPPS
DPEAVVDPQL RVHGLRGLRV VDASIMPQIV SGNTNAPTVM IAEKASDLIR GLTALTASDA
PVWVHPRWRE CQR
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