| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2993 |
|---|
| Symbol | |
|---|
| ID | 5870778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3342385 |
|---|
| End bp | 3343566 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641548109 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001669221 |
|---|
| Protein GI | 167033990 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.620266 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATAG ACTCGTGGGG GCTTACGGAT GCAATCGAGC TATTGGAGCA GGCGCCCTGC
GGTCTAGTGG TGACTACCGA GGACGGCACC ATTCTCCGCG CCAATCGCAC CTTCGCTGGA
TGGATCGGTT GTAGTCCGTC AGATCTGAGA GGGCGGCGGT TCCAAGAGCT GCTGACAATG
GGAGGGCGCA TTTTCCATCA GACCCACTGG GCCCCCTTGA TGAAACTTCA AGGTTCGGTC
GCAGAAGTAA AGCTCGATCT GCTGCATGCC CAGGGTCATG TCATCACCAT GTTGCTCAAT
GGTGTGAGGA GAGAACACCC CGAGGGTGTT CGCAACGAGC TGGCTTTTTT CGGAACCATA
GAGCGTGATC GGTACGAACG CGAACTGCTT GCAGCACGCA AACGAGCGGA GGAATTGCTG
TCAGAAAAGT CGATGGCTGA GTCCGCCTTG AAAAGCGCGC AGGCTGAGCT TGCTGTGGCC
TATGAGAGGG CTGAGCGAAG AGCTTCATTT GCCGAACAGA TGATTGCCAT TGCCAGCCAC
GACCTGAAGA ATCCCCTCAC GGCTATCAAA ATGGCCTCAG AGCTTTTGGG TCGTGGGGAG
CGGCGGGAGA GAGAACAGAA GTTGCTGAGC AACATAGTTT CGTCTTCTGA GCGCGCTCAA
AGAATGATCG CAGATCTGCT CGATCTAGCC TCGGTGCGAA TCGGTCAAGG GATGGGGATC
AAGCGTCAGC TCGTCGATGT GTCCCTGCTC GTAGACCAAA GCGTCGGCGA ATTGCGAGTA
GCCTTCGTTC ACGCCAAAAT TCGGCACCTG TCAAAATGCC GAGGTTTTGC GGACGTCGAT
CCTGATAGAA CGCAACAGAT GATAGGCAAC CTGGTCGCAA ACAGCGTGGC CTATGGTGAC
CTCAAACATC CGATAACCAT CACGACCGAG CTCAGATGTG AGGCGTTATG GATTACGGTT
CACAATCACG GACAAGTCAT ACCTGAATCT CTGATACCTG ACCTCTTCGA GCCCATGACC
CGAGCCAGTG ATCGCACAGA AAACGTGAGA TCCGTCGGCC TTGGACTTTT CATCGTTCGC
GAGATCGCCA ACGCTCACGG CGGAACAATC ACCGTCCATT CCGCACCTGT GACCGGCACA
GCCGTCGAAA TTCAGATGCC GTTGACTGGA ATCGGGAGTT GA
|
|---|
| Protein sequence | MSIDSWGLTD AIELLEQAPC GLVVTTEDGT ILRANRTFAG WIGCSPSDLR GRRFQELLTM
GGRIFHQTHW APLMKLQGSV AEVKLDLLHA QGHVITMLLN GVRREHPEGV RNELAFFGTI
ERDRYERELL AARKRAEELL SEKSMAESAL KSAQAELAVA YERAERRASF AEQMIAIASH
DLKNPLTAIK MASELLGRGE RREREQKLLS NIVSSSERAQ RMIADLLDLA SVRIGQGMGI
KRQLVDVSLL VDQSVGELRV AFVHAKIRHL SKCRGFADVD PDRTQQMIGN LVANSVAYGD
LKHPITITTE LRCEALWITV HNHGQVIPES LIPDLFEPMT RASDRTENVR SVGLGLFIVR
EIANAHGGTI TVHSAPVTGT AVEIQMPLTG IGS
|
|---|
| |