Gene PputGB1_2993 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_2993 
Symbol 
ID5870778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp3342385 
End bp3343566 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content55% 
IMG OID641548109 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_001669221 
Protein GI167033990 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.620266 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTATAG ACTCGTGGGG GCTTACGGAT GCAATCGAGC TATTGGAGCA GGCGCCCTGC 
GGTCTAGTGG TGACTACCGA GGACGGCACC ATTCTCCGCG CCAATCGCAC CTTCGCTGGA
TGGATCGGTT GTAGTCCGTC AGATCTGAGA GGGCGGCGGT TCCAAGAGCT GCTGACAATG
GGAGGGCGCA TTTTCCATCA GACCCACTGG GCCCCCTTGA TGAAACTTCA AGGTTCGGTC
GCAGAAGTAA AGCTCGATCT GCTGCATGCC CAGGGTCATG TCATCACCAT GTTGCTCAAT
GGTGTGAGGA GAGAACACCC CGAGGGTGTT CGCAACGAGC TGGCTTTTTT CGGAACCATA
GAGCGTGATC GGTACGAACG CGAACTGCTT GCAGCACGCA AACGAGCGGA GGAATTGCTG
TCAGAAAAGT CGATGGCTGA GTCCGCCTTG AAAAGCGCGC AGGCTGAGCT TGCTGTGGCC
TATGAGAGGG CTGAGCGAAG AGCTTCATTT GCCGAACAGA TGATTGCCAT TGCCAGCCAC
GACCTGAAGA ATCCCCTCAC GGCTATCAAA ATGGCCTCAG AGCTTTTGGG TCGTGGGGAG
CGGCGGGAGA GAGAACAGAA GTTGCTGAGC AACATAGTTT CGTCTTCTGA GCGCGCTCAA
AGAATGATCG CAGATCTGCT CGATCTAGCC TCGGTGCGAA TCGGTCAAGG GATGGGGATC
AAGCGTCAGC TCGTCGATGT GTCCCTGCTC GTAGACCAAA GCGTCGGCGA ATTGCGAGTA
GCCTTCGTTC ACGCCAAAAT TCGGCACCTG TCAAAATGCC GAGGTTTTGC GGACGTCGAT
CCTGATAGAA CGCAACAGAT GATAGGCAAC CTGGTCGCAA ACAGCGTGGC CTATGGTGAC
CTCAAACATC CGATAACCAT CACGACCGAG CTCAGATGTG AGGCGTTATG GATTACGGTT
CACAATCACG GACAAGTCAT ACCTGAATCT CTGATACCTG ACCTCTTCGA GCCCATGACC
CGAGCCAGTG ATCGCACAGA AAACGTGAGA TCCGTCGGCC TTGGACTTTT CATCGTTCGC
GAGATCGCCA ACGCTCACGG CGGAACAATC ACCGTCCATT CCGCACCTGT GACCGGCACA
GCCGTCGAAA TTCAGATGCC GTTGACTGGA ATCGGGAGTT GA
 
Protein sequence
MSIDSWGLTD AIELLEQAPC GLVVTTEDGT ILRANRTFAG WIGCSPSDLR GRRFQELLTM 
GGRIFHQTHW APLMKLQGSV AEVKLDLLHA QGHVITMLLN GVRREHPEGV RNELAFFGTI
ERDRYERELL AARKRAEELL SEKSMAESAL KSAQAELAVA YERAERRASF AEQMIAIASH
DLKNPLTAIK MASELLGRGE RREREQKLLS NIVSSSERAQ RMIADLLDLA SVRIGQGMGI
KRQLVDVSLL VDQSVGELRV AFVHAKIRHL SKCRGFADVD PDRTQQMIGN LVANSVAYGD
LKHPITITTE LRCEALWITV HNHGQVIPES LIPDLFEPMT RASDRTENVR SVGLGLFIVR
EIANAHGGTI TVHSAPVTGT AVEIQMPLTG IGS