Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2993 |
Symbol | |
ID | 5870778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3342385 |
End bp | 3343566 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641548109 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_001669221 |
Protein GI | 167033990 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.620266 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTATAG ACTCGTGGGG GCTTACGGAT GCAATCGAGC TATTGGAGCA GGCGCCCTGC GGTCTAGTGG TGACTACCGA GGACGGCACC ATTCTCCGCG CCAATCGCAC CTTCGCTGGA TGGATCGGTT GTAGTCCGTC AGATCTGAGA GGGCGGCGGT TCCAAGAGCT GCTGACAATG GGAGGGCGCA TTTTCCATCA GACCCACTGG GCCCCCTTGA TGAAACTTCA AGGTTCGGTC GCAGAAGTAA AGCTCGATCT GCTGCATGCC CAGGGTCATG TCATCACCAT GTTGCTCAAT GGTGTGAGGA GAGAACACCC CGAGGGTGTT CGCAACGAGC TGGCTTTTTT CGGAACCATA GAGCGTGATC GGTACGAACG CGAACTGCTT GCAGCACGCA AACGAGCGGA GGAATTGCTG TCAGAAAAGT CGATGGCTGA GTCCGCCTTG AAAAGCGCGC AGGCTGAGCT TGCTGTGGCC TATGAGAGGG CTGAGCGAAG AGCTTCATTT GCCGAACAGA TGATTGCCAT TGCCAGCCAC GACCTGAAGA ATCCCCTCAC GGCTATCAAA ATGGCCTCAG AGCTTTTGGG TCGTGGGGAG CGGCGGGAGA GAGAACAGAA GTTGCTGAGC AACATAGTTT CGTCTTCTGA GCGCGCTCAA AGAATGATCG CAGATCTGCT CGATCTAGCC TCGGTGCGAA TCGGTCAAGG GATGGGGATC AAGCGTCAGC TCGTCGATGT GTCCCTGCTC GTAGACCAAA GCGTCGGCGA ATTGCGAGTA GCCTTCGTTC ACGCCAAAAT TCGGCACCTG TCAAAATGCC GAGGTTTTGC GGACGTCGAT CCTGATAGAA CGCAACAGAT GATAGGCAAC CTGGTCGCAA ACAGCGTGGC CTATGGTGAC CTCAAACATC CGATAACCAT CACGACCGAG CTCAGATGTG AGGCGTTATG GATTACGGTT CACAATCACG GACAAGTCAT ACCTGAATCT CTGATACCTG ACCTCTTCGA GCCCATGACC CGAGCCAGTG ATCGCACAGA AAACGTGAGA TCCGTCGGCC TTGGACTTTT CATCGTTCGC GAGATCGCCA ACGCTCACGG CGGAACAATC ACCGTCCATT CCGCACCTGT GACCGGCACA GCCGTCGAAA TTCAGATGCC GTTGACTGGA ATCGGGAGTT GA
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Protein sequence | MSIDSWGLTD AIELLEQAPC GLVVTTEDGT ILRANRTFAG WIGCSPSDLR GRRFQELLTM GGRIFHQTHW APLMKLQGSV AEVKLDLLHA QGHVITMLLN GVRREHPEGV RNELAFFGTI ERDRYERELL AARKRAEELL SEKSMAESAL KSAQAELAVA YERAERRASF AEQMIAIASH DLKNPLTAIK MASELLGRGE RREREQKLLS NIVSSSERAQ RMIADLLDLA SVRIGQGMGI KRQLVDVSLL VDQSVGELRV AFVHAKIRHL SKCRGFADVD PDRTQQMIGN LVANSVAYGD LKHPITITTE LRCEALWITV HNHGQVIPES LIPDLFEPMT RASDRTENVR SVGLGLFIVR EIANAHGGTI TVHSAPVTGT AVEIQMPLTG IGS
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