| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2966 |
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| Symbol | |
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| ID | 5870751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3319232 |
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| End bp | 3321019 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641548082 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_001669194 |
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| Protein GI | 167033963 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.482904 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGGCA CGGTAGGCGA CTTTCTGGTG GAGCGTTTGT ATCAATGGGG CGTTCGGCGC
ATCTTCGGTT ACCCCGGCGA TGGCATCAAT GGAGTGTTCG GCGCGCTGAG CCGGGCCAAC
GGCAAGATTG AATTCATACA GGCCCGCCAT GAGGAAATGG CCGCCTTCAT GGCCAGCGCC
CATGCCAAGT TCACCGGCGA GCTCGGCGTT TGCATGGCCA CCTCCGGCCC AGGCGCCTCG
CACCTGCTTA CCGGTCTGTA CGATGCACGC ATGGACCACC AGCCGGTGCT GGCCATCGTC
GGTCAACAGG CCCGTGCGGC ACTGGGCGGG CATTACCAGC AGGAGCTGGA CCTGCTGTCG
ATGTTCAAGG ACGTCGCCGG TGCGTTCGTC CAGCAGGCAT CGACACCGGA GCAGGTGCGC
CACCTGCTCG ACCGTGCAGT GCGCACGGCC GTCGGCGAAC GCCGCGTGAC CGCCGTCATC
CTGCCCAACG ACCTGCAGGA CCTGCCCTAC AATGAACCAC CGAGAGCCCA CGGTACGGTG
CATTCCGGCA TCGGTTACAG CAAGCCCAGG GTGGTACCGT TCGACGAAGA CCTGCAGCGA
GCCGCCGATG TGCTCAACGC CGGGCACAAG GTGGCGATAC TGGTAGGCGC CGGCGCACTG
CAGGCGACAG ACCAGGTCAT TGCAATTGCC GAAAAGCTCG GCGCCGGGGT GGCCAAAGCC
CTGCTGGGCA AGGCTGTGCT GCCGGACGAT CTGCCGTGGG TCACCGGGTC GATCGGCCTG
CTCGGCACAG AACCCAGTTA TCAGCTGATG ACCGAATGCG ACACCTTGCT GATGATCGGC
TCCGGCTTTC CCTACGCCGA GTTCTTGCCC AAGGAAGGCC AGGCGCGTGG CGTGCAGATC
GACCTGCAAC CCGACATGCT CAGCCTGCGC TATCCGATGG AGGTCAACCT GGTCGGCGAC
GCCAGCGAAA CATTGCGCGC ACTGTTGCCG TTGCTTGAGC ACAAGACCGA TCGGCGCTGG
CGCGACAAGG TGGAGACCTG GCGTGCGCAG TGGGACAAGA CCGTGGCCAA GCGCGCGCTG
GTCAAGGCTG ACCCGATCAA CCCGCAACGC GTGGTCCATG AGCTGTCCCC TCGCCTGCCC
GACCACGCCA TCATCACCAG CGATTCCGGT TCCTGTGCCA ACTGGTTTGC CCGCGACCTG
CAAATTCGCC AGGGGATGCA GTGCTCGCTG TCCGGCGGCC TGGCTTGCAT GGGCGCAGCC
GTGCCCTACG CGATTGCAGC CAAGTTCGCC CACCCGCAAC GGGCTGTGGT CGCTTTGGTG
GGCGATGGGG CGATGCAGAT GAACAACCTC GCCGAACTGA TCACCGTGGC CAAATACTGG
CAGCAGTGGG ACAACCCACA ATGGATCTGT GCCGTGTTCA ACAATGAGGA CCTCAACCAG
GTAACGTGGG AGCAACGGGC GATGGAGGGC GACCCCAAGT TCGAAGCTTC GCAGTCGATC
CCTGACGTGC CCTACCATTT GTTCGCCATT TCCATTGGCC TGCAAGGTAT CTACGTAGAT
CGCGAAGAGG ACGTTGCCGC TGCGTGGGAG CGCGCGCTGG CTGCTGATCG GCCAGTACTG
ATCGAGTTCA AGACCGACCC GAACGTGCCA CCCCTGCCAC CCCACATCAA GCTGGAGCAG
GCAAAGAAGT TTGCCAGTAC CTTGCTAAAG GGGGACCCCG ACCAGGCGGG CATCATCGTG
CAGACAGCCA AGCAGGTGCT CAGCTCGGTA CTGCCTGGCA AGAAGTGA
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| Protein sequence | MTGTVGDFLV ERLYQWGVRR IFGYPGDGIN GVFGALSRAN GKIEFIQARH EEMAAFMASA
HAKFTGELGV CMATSGPGAS HLLTGLYDAR MDHQPVLAIV GQQARAALGG HYQQELDLLS
MFKDVAGAFV QQASTPEQVR HLLDRAVRTA VGERRVTAVI LPNDLQDLPY NEPPRAHGTV
HSGIGYSKPR VVPFDEDLQR AADVLNAGHK VAILVGAGAL QATDQVIAIA EKLGAGVAKA
LLGKAVLPDD LPWVTGSIGL LGTEPSYQLM TECDTLLMIG SGFPYAEFLP KEGQARGVQI
DLQPDMLSLR YPMEVNLVGD ASETLRALLP LLEHKTDRRW RDKVETWRAQ WDKTVAKRAL
VKADPINPQR VVHELSPRLP DHAIITSDSG SCANWFARDL QIRQGMQCSL SGGLACMGAA
VPYAIAAKFA HPQRAVVALV GDGAMQMNNL AELITVAKYW QQWDNPQWIC AVFNNEDLNQ
VTWEQRAMEG DPKFEASQSI PDVPYHLFAI SIGLQGIYVD REEDVAAAWE RALAADRPVL
IEFKTDPNVP PLPPHIKLEQ AKKFASTLLK GDPDQAGIIV QTAKQVLSSV LPGKK
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