| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2962 |
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| Symbol | |
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| ID | 5870747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3315024 |
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| End bp | 3317567 |
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| Gene Length | 2544 bp |
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| Protein Length | 847 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641548078 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001669190 |
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| Protein GI | 167033959 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0327422 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.517627 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGTGC TTGCTGACAA TGAATTGTCG ACCCGTAGTC ATGTGGTGGG GCAACTTATC
ATGGTGTTCT CCTTGATCTT GTTGTTTGCC CTGTTGCTGG GGCTCTTCTC CCTCTACCGC
CTCGCCGAGG CGCTCGATGT TCAACAAATG GAGCAAAGCC GCTTCCATGC TGATTCGGCC
ATCAACCAAC TGCAGAAGAA CGACAGAACG TTCCTGCTGA CCCACTCCGA TTGGCAGGCC
GCCTACGATC ACTTGGGGAA ACAGGTCGAC GCGCATTGGG CATACATCGA AGATAACGTA
GGAGCCACGC TCTTCACCTC CGATGGGTAC GACGGGGTAT TCGTGCTCGA TGATGACGGT
ACCCGGTACG CCATGCTGGA AGGTCAGCTC AGCGAGCAGG GGTTTGAGCA GCTCACCGCC
AGTGCACGCA AGGTCTTGCA CCTTGCTCGC CAAGCCGCGC AGCATGACCA GGCGACTTCA
GGGTATATCG TATTTCGTGG TCTGCCGGCG GTTTACAGCG CTGCACTGAT ACGTCCACAG
GCCCAACCCC ACCACCTGCG GGAACCCACT GCAGTGATGG TGTTCATACG CGTTCTCTCG
CCGAAGGTGC TGTTGGTGCT GGGCGAGTCA GCGGGGTTGT CCGGCGTGGC TGTAAGCGAT
TCGACCGATC AGCGTAAAGG GCGCGCTGCT CTTGCCCTCG AAGGCATCGG TCTCGCCCTT
ACCTGGGATT TACCGCAGCC TGGTACCCAA TTGATCAAGA CAGTGGTTAC GCCACTCGCT
ATCGCCGTGC TCCTGATTGC GCTGAGCATT GCATTGTTTG CACGCTATGC GATGCGGGCC
AGCACGAGGA TCGATCGTAG CCACCGTGCG CTCATGATCT CCAGGGCTGC CCTGCAATCG
AGCGAAGAGC GCTTCAAGGC CGTGGCCGAA GCCGCGTCGG ACTGGATCTG GGAAACGGAT
GTGCTCCTGC GGCTAACCTA CCTGTCGGAC CGGTTTAGCG AACTGACCGG GCATCCTGTC
GAAGTATGGC GACAGCGCCC GATTACCGAG CTGCTGTCGT GTGATACCAG TCATCTCCAG
ACCTGGCTTC ATAGTCTGGC TGCGACAGGC TCTTCCGGTA CCCTACGCTG CCAGTACCAA
GATCACCTTG GCCAACAGCG TACTTGCAGA ATCGCTTCCC GCGCAATCGT GGATCAGAGC
GTCTGTACTG GGTTTCGTGG CACTTGTAGC GACATCACCG ACGAAGTAGC CGCACATGCC
CAGATTCAGC ATCTCTCCTC GCACGACGCT CTTACCGGGC TGCCGAATCG CAACAAGCTT
TTCCGGTTCC TCGAACAAAG CATGACTGGC ACTGGGCCCC TCCAGGTAGC GCTGCTGATA
CTGGATCTTG ATAATTTCAA ACCAATCAAC GACAGCCTTG GGCATCCGGC CGGCGATGCG
GTGTTGCTCG AGGTGGCCGG CCGCCTTGGT CAGGCTACCC GCGACAGTGA CCTGGTCGCC
CGTCTGGGAG GCGATGAGTT CATCGTCGTA GTGACCCGGC CAGGGGATCA CAACAACATG
GAGCGATTCT GCATCCGATT GATCGAGGCG ATCAAACGAC CCATGCGAGT CGAGGGGCAT
AGCGTTCAAG TGGGTGTGAG TCTTGGGGTC GTGATGTCGG CTGAATATCC CGGTACGCCA
AGCGATTTGA TCCGCTACGC TGACGTGGCC CTTTACAACG CCAAGCAGGC CGGCAAAAAC
ACCTGGCGCT TTTTTTCAGC GCAACTGAAT GCAGCATTGA TGGACAAGCG TGTGCTGGAA
AGCGAACTGC GTGACGGCAT ACCACGTGGC GAGCTGGTGC TGCATTTCCA GCCGCGTTTC
AAGGTCGACG GGGTCTCGCT CGCATCGGCT GAGGCCCTCG TGCGCTGGCA ACACCCACGC
CTGGGTCTGC TACGCCCGGA TAGATTCATC CCGCTGGCCG AAGAGTCTGA CCTGATCGTG
CTGCTTGGCA ACTGGGTATT GCAGGAAGCC TGCAATAAGG CGCGCGGGTG GCCACAGGCA
ATAATGGTGT CGGTAAACAT GTCGCCGGCC CAGTTCAGCC GCAGCGATGT AGTTCGCGAC
GTCGGCGACG CATTGCGCAC CACTTGCTTG CCGGCCCATC GACTGGAACT GGAAATCACT
GAAAACGTCA TGCTCAACGA CGTCGAAGGC GCTCTGCATA CCATGCATGC ACTGAAGGAG
CTGGGCGTGC GCCTGAACAT GGACGACTTT GGGACCGGTT ACTCCTCCCT GGGTTACCTA
CGTACCTACC CGTTCGACAG CATCAAGATT GACAAGCGCT TCGTCCAGCA TCTGGGCAAG
AGCGGTAGCG ACCGTAGCGT GGTCCAGGCC ATCATCAATC TTGGCAACGC AATGGGTATG
ACGGTAACCG CCGAAGGTGT CGAGACAGCT GAGCAACTAG CCCTCCTTAG CGATGACCAA
TGCCATGAAG TGCAAGGTTT CCTGCTAAGC AAACCGCTGG AAAACGAAGC GCTGATAGGG
ATGATGAGAG AGCCGATACC ATGA
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| Protein sequence | MDVLADNELS TRSHVVGQLI MVFSLILLFA LLLGLFSLYR LAEALDVQQM EQSRFHADSA
INQLQKNDRT FLLTHSDWQA AYDHLGKQVD AHWAYIEDNV GATLFTSDGY DGVFVLDDDG
TRYAMLEGQL SEQGFEQLTA SARKVLHLAR QAAQHDQATS GYIVFRGLPA VYSAALIRPQ
AQPHHLREPT AVMVFIRVLS PKVLLVLGES AGLSGVAVSD STDQRKGRAA LALEGIGLAL
TWDLPQPGTQ LIKTVVTPLA IAVLLIALSI ALFARYAMRA STRIDRSHRA LMISRAALQS
SEERFKAVAE AASDWIWETD VLLRLTYLSD RFSELTGHPV EVWRQRPITE LLSCDTSHLQ
TWLHSLAATG SSGTLRCQYQ DHLGQQRTCR IASRAIVDQS VCTGFRGTCS DITDEVAAHA
QIQHLSSHDA LTGLPNRNKL FRFLEQSMTG TGPLQVALLI LDLDNFKPIN DSLGHPAGDA
VLLEVAGRLG QATRDSDLVA RLGGDEFIVV VTRPGDHNNM ERFCIRLIEA IKRPMRVEGH
SVQVGVSLGV VMSAEYPGTP SDLIRYADVA LYNAKQAGKN TWRFFSAQLN AALMDKRVLE
SELRDGIPRG ELVLHFQPRF KVDGVSLASA EALVRWQHPR LGLLRPDRFI PLAEESDLIV
LLGNWVLQEA CNKARGWPQA IMVSVNMSPA QFSRSDVVRD VGDALRTTCL PAHRLELEIT
ENVMLNDVEG ALHTMHALKE LGVRLNMDDF GTGYSSLGYL RTYPFDSIKI DKRFVQHLGK
SGSDRSVVQA IINLGNAMGM TVTAEGVETA EQLALLSDDQ CHEVQGFLLS KPLENEALIG
MMREPIP
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