| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2949 |
|---|
| Symbol | |
|---|
| ID | 5870734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3300803 |
|---|
| End bp | 3301756 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641548065 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001669177 |
|---|
| Protein GI | 167033946 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.440503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGG ACATGACCCA TTCCAGTTTT TGCAACTGGA TCCGCTACAA GCACCTGGTG
CTGATCGATA CCCTGGCGCG CACGCGCAAC ATGCACGCTA CTGCCACGCG CATGAACCTC
AGCCAACCAG CACTCAGCAA GATGCTGCGT GACCTTGAGG AGCAGTTCGG CTTTGCCCTG
TTCGAGCGCC TGCCACGCAG CATGCCGCCC ACCGAGCTGG GTGAATACGT GGTGCGTTAC
GCCCAGGGTG CGCTGGCCGA GTCGCAACAG TTTGTCGACC AGGTCAACCG CCTGCGTAAC
GGCGGGCATG GCTTTATCCG CGTTGGTGGG ATCTTTGCCG CAACCGCCTT GGTGCTGCCG
CAGGCCATCG CCGCCATCAA GGCACGCAGC CCATTGCTGT CGATTGAAGT GGTGGAGCAT
TCCAGTGATC ACCTGCTGAC CATGCTTGAG CAGAACAAGC TGGACATCAT GATTGGCCGT
TTCACCGAAG AGCGTTTCAG CCAACTGTTC GACTTCCAGC CGCTGGAGCC CGAGCCCTTC
AGCCTGGTAG TGAACAGCGA GCACCCGCTC AACCAGCTCG ACAGCACGCC ACTGGAAGCA
CTCGGCGACT GGCCGTGGGT GCTGTACCCG GTGGGCACGC CGATCCGCAA CCGCCTGGAG
CAGGCGTTTC GGGTGGCCGG TATCGCAACG CCCGCCGACA GCGTGGAGAC CATCTCCATG
CCGATGTTCC TGCAACTGCT GCAATCAGCC CCGATGATCG CCATGTTACC GCGCTCGATG
GTTGCTGCGC AGTTGGCCAG CGGGCAGTTC AAGGAGCTGC ACAGCCCCTT GCATGTGCCG
GCGCTGGAGT ATGGTGTGGT CACCCGCAAG GATGAACCGC TGAGTGCTTC GGCCCGCGCG
TTTGTCGAGA TCTTGCTGGA GGGCGCACAA CGTCGCAGGG CAGCGCTAGC ATAG
|
|---|
| Protein sequence | MPPDMTHSSF CNWIRYKHLV LIDTLARTRN MHATATRMNL SQPALSKMLR DLEEQFGFAL
FERLPRSMPP TELGEYVVRY AQGALAESQQ FVDQVNRLRN GGHGFIRVGG IFAATALVLP
QAIAAIKARS PLLSIEVVEH SSDHLLTMLE QNKLDIMIGR FTEERFSQLF DFQPLEPEPF
SLVVNSEHPL NQLDSTPLEA LGDWPWVLYP VGTPIRNRLE QAFRVAGIAT PADSVETISM
PMFLQLLQSA PMIAMLPRSM VAAQLASGQF KELHSPLHVP ALEYGVVTRK DEPLSASARA
FVEILLEGAQ RRRAALA
|
|---|
| |