Gene PputGB1_2897 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_2897 
Symbol 
ID5870683 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp3251311 
End bp3252516 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content68% 
IMG OID641548015 
Productmajor facilitator transporter 
Protein accessionYP_001669127 
Protein GI167033896 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGTCG CAAAGGATCC TGCAACCCTG CTACCTGCCA GCACCCTGGA CTTGCGCCCG 
CTGCTGCTGG CCAACATGGC CTGTACCATG TCGATGATGG CCTTCGTCGC CTTGATCGGC
CCGATTGCCC GCCAACTCGG CATGGCCACC TGGCAAGCTG GCGCCGCCGT AACCGTGGCT
GGCGTGGTTT GGGTGCTGCT GGCCCGGCCT TGGGGGCGAC TATCGGATCG CCTCGGCCGC
CGGCGCATCC TGCTGCTGGG CAGCGCCGGC TTCACCCTGG CTTACTGGCT GCTATGCCTG
TTCGTTGAAG GCGCGCTGCG CTGGTTGCCG GGCGCGACCC TGGCGTTCAT CGGCCTGATC
GTCGCCCGCG GCTGCATCGG CGCCTTCTAC GCCGCCATCC CAGTGGGCTG CAATGCGCTG
ATAGCCGACC ATGTCGAGCC GCAACGCCGG GCCCGGGCCA TGGCCTCGCT GGGCGCGGCC
AACGCCGTCG GCCTGGTGGT CGGGCCAGCG CTGGCGGCGC TACTGGCACG GCACAGCCTG
AGCCTGCCGT TCCACATCAT GTCGCTGCTA CCGGCCACGG CCTTCCTCGT GCTGCTCTTT
ACCCTAAAAC CACAGGCGCT GCCGCACGCC CACGCCCCCA GCCCGGTGCG GCTGAACGAC
CCGCGCCTGC GCAGGCCGTT GCTGGTGGCA TTCAGCGCCA TGCTCAGCGT GACCGTGTCG
CAGATCATCG TCGGTTTCTT TGCCCTCGAC CGCTTGCATC TGGGCCCCGC CGAAGCGGCC
CAGGCTGCCG GCATCGCGCT GACCACGGTG GGCGTAGCGC TGATGCTGGC GCAGGTATTG
CTGCGCCAGC TGGAGTGGCC ACCGCTGAAG ATGATCCGGG TAGGTGCCAC GGTATCGGCA
CTGGGCTTTG CCTGCGGGTC GCTGGCCACC ACGGCCCCTT GGCTATGGGC TTGCTACTTT
GTTGCGGCAG CCGGCATGGG CTTTGTGTTC CCAGCGTTTT CGGCACTGGC AGCCAATGCC
ATGCACGCCT CCGAGCAGGG CGCCACAGCC GGCTCCGTGG GAGCTGCCCA GGGCATGGGT
GCGGTGATCG GGCCGCTGGC CGGCACCTTG GTATATGCCC TTGATCCGCG CCTGCCATTC
TTGGCCGTAG CCGTGCTGTT GCTGCTCGTC GGACTGTGGC CGATGCCACG TGAACAGCGG
GTTTGA
 
Protein sequence
MNVAKDPATL LPASTLDLRP LLLANMACTM SMMAFVALIG PIARQLGMAT WQAGAAVTVA 
GVVWVLLARP WGRLSDRLGR RRILLLGSAG FTLAYWLLCL FVEGALRWLP GATLAFIGLI
VARGCIGAFY AAIPVGCNAL IADHVEPQRR ARAMASLGAA NAVGLVVGPA LAALLARHSL
SLPFHIMSLL PATAFLVLLF TLKPQALPHA HAPSPVRLND PRLRRPLLVA FSAMLSVTVS
QIIVGFFALD RLHLGPAEAA QAAGIALTTV GVALMLAQVL LRQLEWPPLK MIRVGATVSA
LGFACGSLAT TAPWLWACYF VAAAGMGFVF PAFSALAANA MHASEQGATA GSVGAAQGMG
AVIGPLAGTL VYALDPRLPF LAVAVLLLLV GLWPMPREQR V