| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2876 |
|---|
| Symbol | |
|---|
| ID | 5870662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3228701 |
|---|
| End bp | 3229381 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641547994 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001669106 |
|---|
| Protein GI | 167033875 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.5251 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCGCG TACTGACCAT CGAAGACGAC GCCGTCACCG GCCAGGAAAT CGTCGCCGAA
CTTACCAGCC ACGGCCTGGA GGTGGATTGG GCCGACAACG GCCGTGAGGG CCTGGCCAAG
GCCATTGCCG GCGGCTACGA CCTGATCACC CTGGACCGCA TGCTGCCCGA GGTCGATGGC
CTGACCATCG TCACCACCCT GCGCAGCCTC AAGATCGCCA CGCCGATCCT GATGATCAGC
GCCCTCTCCG ACGTCGATGA GCGGGTGCGC GGCCTGCGTG CCGGCGGTGA CGACTACCTG
ACCAAACCGT TCGCCTCCGA CGAGATGGCC GCGCGGGTCG AGGTGTTGCT GCGCCGCAAC
AGCGTGCCCA TGACCCAGAC CCGCCTGCAG GTCGCCGACC TGCAACTGGA CCTGATCAGC
CACGAAGCGC GTCGCGGTGA CAACACGCTG AACCTGCTGC CCACCGAGTA CAAGCTACTG
GAATACCTGA TGCGCCACAG CGGCCAGGTA ATCACGCGGA TGATGATTTT CGAGGAAGTC
TGGGGCTACC ACTTCGACCC GGGCACCAAC CTGATCGACG TGCACATCGG CCGCCTTCGC
AAGAAAATCG ACTCCCCCGG CCAATCGCCG CTGATCCGTA CGGTACGGGG CTCCGGCTAT
GCCATTGCTG AACCCGTCTA A
|
|---|
| Protein sequence | MPRVLTIEDD AVTGQEIVAE LTSHGLEVDW ADNGREGLAK AIAGGYDLIT LDRMLPEVDG
LTIVTTLRSL KIATPILMIS ALSDVDERVR GLRAGGDDYL TKPFASDEMA ARVEVLLRRN
SVPMTQTRLQ VADLQLDLIS HEARRGDNTL NLLPTEYKLL EYLMRHSGQV ITRMMIFEEV
WGYHFDPGTN LIDVHIGRLR KKIDSPGQSP LIRTVRGSGY AIAEPV
|
|---|
| |