| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2872 |
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| Symbol | |
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| ID | 5870658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 3223850 |
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| End bp | 3225241 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641547990 |
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| Product | GABA permease |
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| Protein accession | YP_001669102 |
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| Protein GI | 167033871 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACCC ACAAGAACAA TTTGAGTCAT GGATTGAAAT CACGGCATGT GACCATGCTG
TCCATTGCCG GCGTGATCGG CGCCGGCCTG TTTGTCGGTT CTGGCCGCGC CATCGCCGAA
GCAGGCCCGG CCACCATCCT GGCCTATATC CTGGCAGGCG GGCTGGTGGT ATTGGTAATG
CGGATGCTGG CCGAAATGGC GGTTGCCTCG CCGGATACCG GCTCGTTCTC GACTTACGCC
GACCTCGCCA TCGGCAAATG GGCCGGCTAC ACCATCGGTT GGCTGTATTG GTGGTTCTGG
GTGCTGATCA TCCCGATCGA GGCCAATATC GCCGCTACCA TCATCAACTC CTGGGTCCCG
CAGATGGAGA TCTGGGTCTT GTCGTTGGTG ATCACCTTGC TGCTGACCGC CACCAACCTG
TTCAGCGTGA AGAACTACGG CGAGTTCGAA TTCTGGCTGG CACTGGTCAA GGTGGTGGCC
ATCGTCAGCT TCATTGCCCT TGGCGTTTGC GCTATTTTCG GCCTGTTGCC GGGGGCCGGC
GTCAGCGGCG TTTCGCGCCT TTGGGATACC GGCGGCTTCA TGCCCAACGG CTTTGGTGCG
GTGCTGAGCG CGATGCTGAT CACCATGTTC TCGTTCCTCG GGGCCGAGGT GGTGACCATT
GCCGCCGCCG AATCCGACGA GGCGGGCAAG CATATTTCCA AGGCCACCAA TTCGGTGATC
TGGCGGATTA CCCTGTTCTA CATCCTGTCG ATCTTCATCG TGATCGCACT GGTACCGTGG
ACCGACCCTC GCTTGGCTAC CGAAGGTTCT TATGTCACGG TGCTGGATAC ACTTGGCGTG
GCTAATGCCA AGGCCATCAT CGATTTCGTG GTGCTGACGT CGGTGACCAG CTGCCTCAAC
TCGTCGCTGT ACACCGCCTC ACGCATGGTT TATTCCCTGA GCCGGCGCGG TGACGCCCCG
GCCTGTGCCC AGGTAACCAG CCGCAGTGGT ACGCCGGTGG TGGCGGTGCT GTTGTCCACG
GGTGCTGCAT TTCTGGCGGT GATCGCCAAC TACCTGGTAC CGGCCAAGGT GTTCGGCTTC
CTCATGGCAA GTTCCGGCGC CATTGCCCTG CTGGTGTACC TGGTCATCGC CATTTCCCAG
CTGCGTCTGC GCCAGCGCCT GACTGCACAG GGTAAGACGT TGGGCTACCG CATGTGGTTG
TTCCCGTGGC TGACCTGGGG CGTGATCCTG TTCATCAGCG GCGTACTGGT ACTGATGCTG
TTCCGGCCGG ATCACCGCCT GGAAGTGGTG TCGACCATGG TGCTGGCGGT GCTGGTGGTG
TGTTCGGGGC TGCTGGTGAC CCGGCGTCGG GCGCGCGCGG TGGTGGTGGG GGGCGTAGGG
CAGGGCGCCT GA
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| Protein sequence | MQTHKNNLSH GLKSRHVTML SIAGVIGAGL FVGSGRAIAE AGPATILAYI LAGGLVVLVM
RMLAEMAVAS PDTGSFSTYA DLAIGKWAGY TIGWLYWWFW VLIIPIEANI AATIINSWVP
QMEIWVLSLV ITLLLTATNL FSVKNYGEFE FWLALVKVVA IVSFIALGVC AIFGLLPGAG
VSGVSRLWDT GGFMPNGFGA VLSAMLITMF SFLGAEVVTI AAAESDEAGK HISKATNSVI
WRITLFYILS IFIVIALVPW TDPRLATEGS YVTVLDTLGV ANAKAIIDFV VLTSVTSCLN
SSLYTASRMV YSLSRRGDAP ACAQVTSRSG TPVVAVLLST GAAFLAVIAN YLVPAKVFGF
LMASSGAIAL LVYLVIAISQ LRLRQRLTAQ GKTLGYRMWL FPWLTWGVIL FISGVLVLML
FRPDHRLEVV STMVLAVLVV CSGLLVTRRR ARAVVVGGVG QGA
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