| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2864 |
|---|
| Symbol | |
|---|
| ID | 5870650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3211049 |
|---|
| End bp | 3213115 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641547982 |
|---|
| Product | trehalose synthase |
|---|
| Protein accession | YP_001669094 |
|---|
| Protein GI | 167033863 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02455] trehalose synthase, Pseudomonas stutzeri type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.403012 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.711488 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGC CCGACCCGTC ATACGTCAAA TGGCTCGAAG ACCGCGCCAT GCTCAAGGCC
TCTCAGGCGC GCGCCAGCCT GTATTCAGGC CAGTCACGCC TGTGGCAACA ACCCTATGCC
GAGGCCCAGC CCCGGCGCGC CACCGAAATC GCCTCGGTGT GGCTGACCGT CTACCCTGAC
GCCATCATCG CCCCCGAGGG TTGCTCGGTG CTGGGTGCCC TGGCCCACGA AGCGCTGTGG
AAGCGCCTGT CGGAAATCGG CGTACAGGGC CTGCACACCG GCCCGATCAA GCGCTCCGGG
GGTATCCGCG GCCGCGAACT CACCCCCAGC GTGGATGGCA ACTTCGACCG CATCAGTTTC
GACATCGACC CGCTGTACGG CAGCGAGCAG GAGTTGATCC AGATGAGCCG CATGGCCGCC
GCGCACAATG CCGTGACCAT TGACGACCTG ATCCCCTCGC ACACCGGCAA GGGGGCCGAC
TTCCGCCTCG CCGAGCTTGC CCACGGCCCC TACCCTGGGC TGTACCACAT GGTCGAGGTG
CGCGAAGAAG ACTGGCCGCT GCTGCCCGAG GTGCCCGTCG GCCGCGACGC GGTCAACCTG
CTGCCAGCTC AGTGCGACGA GCTCAAGGCC CGCCACTACA TCGTCGGCCA GTTGCAACGG
GTCATTTTCT TCGAGCCGGG CGTCAAGGAA ACCGACTGGA GCGCCACGCC ACCGGTCACA
GGCGTCGACG GCAAGACCCG GCGCTGGGTG TACCTGCACT ACTTCAAGGA AGGCCAACCG
TCGCTGAACT GGCTGGACCC GACCTTCGCC GCCCAGCAGA TGATCATTGG CGACGCGCTG
CACGCCCTGG ATTGCCTGGG TGCGCGCGGC TTGCGCCTGG ACGCCAACGG CTTTCTCGGC
GTGGAAACGC GCGCCAGCGG CACCGCCTGG TCGGAAAGCC ATCCGCTGTC GATCGTCGGC
AATCAGTTGA TCGGCGGCAT GATCCGCAAG GCCGGTGGTT TCAGCTTCCA GGAGCTCAAC
CTGACCCTTG ATGACATTGC GCAGATGTCC AAGGGCGGTG CCGACCTGTC CTACGATTTC
ATTACCCGGC CGGCCTATCA GCATGCGCTG TTGACCGGCG ACACCGCGTT CCTGCGCCTG
ATGCTCAAAG AAATGCATGC CTTCGGCATC GACCCGGCCT CGCTGATCCA TGCCCTGCAG
AACCACGACG AGCTGACGGT GGAACTGGTG CACTTCTGGA CCCTGCATGC CCACGACATG
TACCTGTACA AAGGCCAGAC CCTGCCTGGC AGCATCCTGC GCGAACACAT CCGCGAAGAG
ATCTACGAAC GGCTGTCGGG CGAACATGCG CCCTACAACC TGCGCTTCGT CACCAATGGC
ATCGCCTGCA CCACCGCCAG CCTGATCGCT GCCGCACTGG GCATTCGCGA CCTCGAGCAG
ATTGGCACGG CTGACATCGA ACTGATCCAG AAGGTGCACC TGCTGCTGGT CATGTACAAC
GCCATGCAGC CCGGGGTGGT CGCATTGTCT GGCTGGGACT TGGTCGGCGC CCTGCCCTTG
CCCGCCGAAG CCGTGGCCGA GCGCATGCTC GATGGCGATA CCCGCTGGAT TCACCGGGGC
GGCTATGACC TTGCCGGGCT TGACCCGCAA GCCGAGGCGT CAGTGCGTGG CATGCCGCGT
GCACGGGCAC TGTACGGCAG CCTCGACAGC CAGCTGGAAG CGGTTGATTC GTTTGCCTGC
AAAGTGAAGA AACTGCTAGC GGTACGCCAG GCCTATGGCA TTGCCACCAG CCGTCAGGTG
CTGGTACCCG AGGTCATCAG CCCGGGGCTG CTGGTGATGG TGCATGAGCT GCCAGCCGGG
CGCGGCATCC AGATCAGTGC GTTGAACTTT GGCCATGAAA CGATTGCCGA GGAGCTGCTG
TTGGACGGGT TCACGCCTGG GCCGGTGGTG GACATGATCA ACGAAACGGT CGAAGGCGAC
TTGAGCGAAG ATGGGCGGTT GATGGTGAAC CTGGACCCGT ACGAGGCGCT GTGCCTGCGC
ATCGTCAACA GTAGCGGACA TGTGTAA
|
|---|
| Protein sequence | MTQPDPSYVK WLEDRAMLKA SQARASLYSG QSRLWQQPYA EAQPRRATEI ASVWLTVYPD
AIIAPEGCSV LGALAHEALW KRLSEIGVQG LHTGPIKRSG GIRGRELTPS VDGNFDRISF
DIDPLYGSEQ ELIQMSRMAA AHNAVTIDDL IPSHTGKGAD FRLAELAHGP YPGLYHMVEV
REEDWPLLPE VPVGRDAVNL LPAQCDELKA RHYIVGQLQR VIFFEPGVKE TDWSATPPVT
GVDGKTRRWV YLHYFKEGQP SLNWLDPTFA AQQMIIGDAL HALDCLGARG LRLDANGFLG
VETRASGTAW SESHPLSIVG NQLIGGMIRK AGGFSFQELN LTLDDIAQMS KGGADLSYDF
ITRPAYQHAL LTGDTAFLRL MLKEMHAFGI DPASLIHALQ NHDELTVELV HFWTLHAHDM
YLYKGQTLPG SILREHIREE IYERLSGEHA PYNLRFVTNG IACTTASLIA AALGIRDLEQ
IGTADIELIQ KVHLLLVMYN AMQPGVVALS GWDLVGALPL PAEAVAERML DGDTRWIHRG
GYDLAGLDPQ AEASVRGMPR ARALYGSLDS QLEAVDSFAC KVKKLLAVRQ AYGIATSRQV
LVPEVISPGL LVMVHELPAG RGIQISALNF GHETIAEELL LDGFTPGPVV DMINETVEGD
LSEDGRLMVN LDPYEALCLR IVNSSGHV
|
|---|
| |