| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2859 |
|---|
| Symbol | |
|---|
| ID | 5870645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3206160 |
|---|
| End bp | 3207032 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641547977 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001669089 |
|---|
| Protein GI | 167033858 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.0486796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.274768 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGCC CACCCTCCGT TCCCCCCGAG AAAACCGGGG GGGCCAAAGA TGCCCATGAC
GTCACGGAAA ACAGCCTGCA CGCCATGCTC GAGGTCCCGG AGGAGGGCGA TTCGCCTTAT
CCGGCCGAGC AGGGTGTGCA AACAGACCTG GCAGGCTACC CCGCCGACCC GGACTTCCAA
CTGCGCGGCG GCTTCAAAAA CCTGATGCTC GACGCAGCAA GCCCGCTGTT CGGCCTGGTC
ATTCGCCTGC GCACGCTGGA TGAGCTGACC AACATCGCCT ACGTGCACAA GACCGTGCAA
AACCAGGTCA GCAACATCCG CGAAGAAATG CGGCAGCACG GCTATGCCAC CGCGCATCTG
GAGGTCTACT CCTACGCCTT GTGCCTGCAC CTGGACGAAG CCGTGATGAG CCGCCCGTGG
GGCAACAATT CGTGCTGGAG CCATGAACCG CTGCTGAGCA TCTTCCACGA CGAAACCCAG
GGCGGCGAGA AGGTCTTCGT GCTGCTCGAA CGGGTCATGC AGGCGCCCAA GGAGTTCCAG
GATGTGCTGG AGTTTCTGTA TTACTGCTTC TGCCTGGGGC TCAGGGGCAA GCACGCCCTC
GATCCGAAGT GCGACGAGAT CATCAACGCC CTCATCAGTC GCATGCACAA GGTCATTCGC
GAACTGCGTG GCCCCACGCC GGAAGAGGTG TGCGACCCCT ACAGCAACGT CGTTCATTGT
CCCTACCGCT CGCGACGCTG GGAGTGGCCC TGGTGGAGCC CGCTGCTGAT CTCCGCCATC
GCCATGGTCT GTGCTTACAG CTACTACCGC TACCGTCTCG ACCGGCTCAC CGCCGAAGTC
GTGGAATCGC TCAACGTCAT TTTGCAGCAG TAG
|
|---|
| Protein sequence | MPRPPSVPPE KTGGAKDAHD VTENSLHAML EVPEEGDSPY PAEQGVQTDL AGYPADPDFQ
LRGGFKNLML DAASPLFGLV IRLRTLDELT NIAYVHKTVQ NQVSNIREEM RQHGYATAHL
EVYSYALCLH LDEAVMSRPW GNNSCWSHEP LLSIFHDETQ GGEKVFVLLE RVMQAPKEFQ
DVLEFLYYCF CLGLRGKHAL DPKCDEIINA LISRMHKVIR ELRGPTPEEV CDPYSNVVHC
PYRSRRWEWP WWSPLLISAI AMVCAYSYYR YRLDRLTAEV VESLNVILQQ
|
|---|
| |