Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2781 |
Symbol | |
ID | 5870567 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3124695 |
End bp | 3127112 |
Gene Length | 2418 bp |
Protein Length | 805 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641547899 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001669011 |
Protein GI | 167033780 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.150566 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.217763 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCCCC GCCAGCCGTA CCGCCTGCCC TTCAAGGCAC TGAGCCTTGC CATCGCCATG GCCGCCCTGG CCCCCACGGC GATGGCCGCC GACACCACCC CGCGCACCTA TCACCTGGCC GCTGGCCCAC TGGCCGACGT GCTGGCGCGC TTCGCCGCCA GCGCCGGAGT ACCATTGTCG TTCGACCCGG CCCTGCTCAA CGGCCTACAA AGCCAGGGCC TGCAGGGTAA CTACAGCGTC CCGGAAGGTT TCACCCGCCT GCTGGCCGGC AGTGGCTACA GCCTGATCAC CACCGACAGC GGCGGTTATA CCCTGGCGCC GACGGTCGAC CTGGGCAATG CCCTGGAACT GGGTGCGACC ACCATCAACA GCGACCTGGC CGCCAGCAGC GACACCTGGC AAGGTGGCCA GGTAGCCCGC AGCGCGCGCC TGGGCGTGCT CGGCGACCAG GCCATCAGCG ACGTGCCGTT CAGCGTTACC AGCTACACCG CCAAGACCAT CGCCGACCAG CAGGCCCGCA CCCTGGGTGA CGTGTTGCTC AATGACGCGT CGGTGCGCCA GTCGGCGGGC TTCGGCAACT TCTCGCAAGT GTTCACCATT CGCGGTTTGC CGCTGAACAC CGACGACATC AGCTACAACG GCCTTTACGG CGTACTGCCG CGGCAGATCG TGACCACCGA AGCGCTCGAG CGAGTCGAGG TGTTCAAAGG GTCCAGTGCC TTCCTCAATG GGGTCGCACC CCAAGGCAGC GGCATTGGGG GTGCAATCAA CCTGGTGCCC AAGCGCGCCG AAGATACCCC CACACGGCAC GTTACCCTCG ACTATGCCAC TGGCGACAAC ATTGGCGGCC ATCTCGACCT GGGCACGCGG TTTGGTGAGG ACAATCGTTT CGGCGCCCGC ATCAACCTGG CCCAGCATGA CGGCGGCACT GGCGTGGACG ACGAAGCCCA GCATTCCACC CTGGTTGCCG TGGCCCTTGA TTACCGTGGC GAGCGGCTGC GCTTGTCCAC CGATCTGGGC TACCAGAAGG AACGCATCAA CCAGGGCCGC GCGGTGATCT ACCCCACCGG CAGCAAGGTG CCCCACGCGC CTTCAGCGCG TGACAACTAT TCGCAAGCCT GGAGCTGGTC GCAGCTGGAA GACACCTACG GCATGCTCAA CGCCGAGTAC GACCTGAACG ACAACTGGAT GCTGTATGCC GGCGCCGGCG CCAAGCACAC GCGTGAGAAC GGCGAATACT CCTCGCTGTA CGTCAGCGAC GCGAACGGCA CCGCGCGCGG AGGTTTTCTG TATTCGCCCC ACGACGAGGA CAACAAAAGC GCCGTCGCCG GGCTCAATGG CCGCTTTGCC ACCGGCCCGG TCAGCCACCG GGTCAATTTC GGCCTGTCAG GCATGTGGGG TGAACAGCGT TCGGCCTACG AGGCACTGGC TGCCAGCAAG CGTTATGACA GCAACCTGTA CAACCCGGTG AAAGTGCCGC GCCCCACCGA CACCTACTTT GGCAGCGACC TGCACGACCC GCGCATCGTC GGCAAAAACC GCAACAAGAG CGTCGCATTG TCCGACACCC TGGGTTTTCT TGATGACCGC GTCCTGTTGA CCGTGGGTGT GCGCCGGCAA TCGATCAGCG TCGACAGCTG GGCGACCGCC ACGGGGGTGC GCAACACGCC GTACGACGAG TCGATCACCA CACCGGTGTA TGGCTTGGTG ATCAAGCCTT GGGAGCATGT GTCGTTCTAT GCCAACCGCA TCGAGGGCTT GGCCCAGGGC CCGACGGCAC CGTCGAGTGT CAGCAATGCC AACGAGGTGT TCCCGCCCAA GCGCAGCAAG CAGGTCGAGG CTGGGGTGAA ACTGGACTGG AACAGTTTTG GCGCCACCTT GGGCGTGTAC CGCATCGAAC AGCCCAACAG CGTCACCTAC CGCGCTCCGG GCGCTGCGCT GGACACATTC AGCATGGACG GCGAGCAGGT CAACAAAGGC GTGGAACTGA ACCTGTTTGG TGAGCCCGTC GACGGCTTGC GCCTGCTGAC AGGCGCGGTA TTCATGCACA CCGAGCAGAA GCACACGGCC TATGGCAGCA ACGACGGCAA CCGCGCCGCT GGCGTGCCAC GCTTCCAGTA CAACCTGGGT GCCGACTGGG ACGTGCCTGG CATTCAAGGC GCCGCGCTCA GTGCCCGCTT GCTGCGCACG GGTGGCCAGT ATGTGAATGC GGCCAACAGC CTGAGCATTC CGGCCTGGAC CCGAGTGGAC CTGGGCGCAC GCTACCGTTT CAAGGTCGAT GACAAGCACG TGACATTGCG CGCCAACGTG GAGAACGTGG CGAACAAGGC GTACTGGGCT TCGGCGTCGA CTTCCAACAA CTACTTGACC CAAGGTACGC CGAGAGTGCT GCGATTGTCG GCCAGTGTAG ACTTCTGA
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Protein sequence | MTPRQPYRLP FKALSLAIAM AALAPTAMAA DTTPRTYHLA AGPLADVLAR FAASAGVPLS FDPALLNGLQ SQGLQGNYSV PEGFTRLLAG SGYSLITTDS GGYTLAPTVD LGNALELGAT TINSDLAASS DTWQGGQVAR SARLGVLGDQ AISDVPFSVT SYTAKTIADQ QARTLGDVLL NDASVRQSAG FGNFSQVFTI RGLPLNTDDI SYNGLYGVLP RQIVTTEALE RVEVFKGSSA FLNGVAPQGS GIGGAINLVP KRAEDTPTRH VTLDYATGDN IGGHLDLGTR FGEDNRFGAR INLAQHDGGT GVDDEAQHST LVAVALDYRG ERLRLSTDLG YQKERINQGR AVIYPTGSKV PHAPSARDNY SQAWSWSQLE DTYGMLNAEY DLNDNWMLYA GAGAKHTREN GEYSSLYVSD ANGTARGGFL YSPHDEDNKS AVAGLNGRFA TGPVSHRVNF GLSGMWGEQR SAYEALAASK RYDSNLYNPV KVPRPTDTYF GSDLHDPRIV GKNRNKSVAL SDTLGFLDDR VLLTVGVRRQ SISVDSWATA TGVRNTPYDE SITTPVYGLV IKPWEHVSFY ANRIEGLAQG PTAPSSVSNA NEVFPPKRSK QVEAGVKLDW NSFGATLGVY RIEQPNSVTY RAPGAALDTF SMDGEQVNKG VELNLFGEPV DGLRLLTGAV FMHTEQKHTA YGSNDGNRAA GVPRFQYNLG ADWDVPGIQG AALSARLLRT GGQYVNAANS LSIPAWTRVD LGARYRFKVD DKHVTLRANV ENVANKAYWA SASTSNNYLT QGTPRVLRLS ASVDF
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