Gene PputGB1_2781 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_2781 
Symbol 
ID5870567 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp3124695 
End bp3127112 
Gene Length2418 bp 
Protein Length805 aa 
Translation table11 
GC content64% 
IMG OID641547899 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_001669011 
Protein GI167033780 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.150566 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.217763 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCCCC GCCAGCCGTA CCGCCTGCCC TTCAAGGCAC TGAGCCTTGC CATCGCCATG 
GCCGCCCTGG CCCCCACGGC GATGGCCGCC GACACCACCC CGCGCACCTA TCACCTGGCC
GCTGGCCCAC TGGCCGACGT GCTGGCGCGC TTCGCCGCCA GCGCCGGAGT ACCATTGTCG
TTCGACCCGG CCCTGCTCAA CGGCCTACAA AGCCAGGGCC TGCAGGGTAA CTACAGCGTC
CCGGAAGGTT TCACCCGCCT GCTGGCCGGC AGTGGCTACA GCCTGATCAC CACCGACAGC
GGCGGTTATA CCCTGGCGCC GACGGTCGAC CTGGGCAATG CCCTGGAACT GGGTGCGACC
ACCATCAACA GCGACCTGGC CGCCAGCAGC GACACCTGGC AAGGTGGCCA GGTAGCCCGC
AGCGCGCGCC TGGGCGTGCT CGGCGACCAG GCCATCAGCG ACGTGCCGTT CAGCGTTACC
AGCTACACCG CCAAGACCAT CGCCGACCAG CAGGCCCGCA CCCTGGGTGA CGTGTTGCTC
AATGACGCGT CGGTGCGCCA GTCGGCGGGC TTCGGCAACT TCTCGCAAGT GTTCACCATT
CGCGGTTTGC CGCTGAACAC CGACGACATC AGCTACAACG GCCTTTACGG CGTACTGCCG
CGGCAGATCG TGACCACCGA AGCGCTCGAG CGAGTCGAGG TGTTCAAAGG GTCCAGTGCC
TTCCTCAATG GGGTCGCACC CCAAGGCAGC GGCATTGGGG GTGCAATCAA CCTGGTGCCC
AAGCGCGCCG AAGATACCCC CACACGGCAC GTTACCCTCG ACTATGCCAC TGGCGACAAC
ATTGGCGGCC ATCTCGACCT GGGCACGCGG TTTGGTGAGG ACAATCGTTT CGGCGCCCGC
ATCAACCTGG CCCAGCATGA CGGCGGCACT GGCGTGGACG ACGAAGCCCA GCATTCCACC
CTGGTTGCCG TGGCCCTTGA TTACCGTGGC GAGCGGCTGC GCTTGTCCAC CGATCTGGGC
TACCAGAAGG AACGCATCAA CCAGGGCCGC GCGGTGATCT ACCCCACCGG CAGCAAGGTG
CCCCACGCGC CTTCAGCGCG TGACAACTAT TCGCAAGCCT GGAGCTGGTC GCAGCTGGAA
GACACCTACG GCATGCTCAA CGCCGAGTAC GACCTGAACG ACAACTGGAT GCTGTATGCC
GGCGCCGGCG CCAAGCACAC GCGTGAGAAC GGCGAATACT CCTCGCTGTA CGTCAGCGAC
GCGAACGGCA CCGCGCGCGG AGGTTTTCTG TATTCGCCCC ACGACGAGGA CAACAAAAGC
GCCGTCGCCG GGCTCAATGG CCGCTTTGCC ACCGGCCCGG TCAGCCACCG GGTCAATTTC
GGCCTGTCAG GCATGTGGGG TGAACAGCGT TCGGCCTACG AGGCACTGGC TGCCAGCAAG
CGTTATGACA GCAACCTGTA CAACCCGGTG AAAGTGCCGC GCCCCACCGA CACCTACTTT
GGCAGCGACC TGCACGACCC GCGCATCGTC GGCAAAAACC GCAACAAGAG CGTCGCATTG
TCCGACACCC TGGGTTTTCT TGATGACCGC GTCCTGTTGA CCGTGGGTGT GCGCCGGCAA
TCGATCAGCG TCGACAGCTG GGCGACCGCC ACGGGGGTGC GCAACACGCC GTACGACGAG
TCGATCACCA CACCGGTGTA TGGCTTGGTG ATCAAGCCTT GGGAGCATGT GTCGTTCTAT
GCCAACCGCA TCGAGGGCTT GGCCCAGGGC CCGACGGCAC CGTCGAGTGT CAGCAATGCC
AACGAGGTGT TCCCGCCCAA GCGCAGCAAG CAGGTCGAGG CTGGGGTGAA ACTGGACTGG
AACAGTTTTG GCGCCACCTT GGGCGTGTAC CGCATCGAAC AGCCCAACAG CGTCACCTAC
CGCGCTCCGG GCGCTGCGCT GGACACATTC AGCATGGACG GCGAGCAGGT CAACAAAGGC
GTGGAACTGA ACCTGTTTGG TGAGCCCGTC GACGGCTTGC GCCTGCTGAC AGGCGCGGTA
TTCATGCACA CCGAGCAGAA GCACACGGCC TATGGCAGCA ACGACGGCAA CCGCGCCGCT
GGCGTGCCAC GCTTCCAGTA CAACCTGGGT GCCGACTGGG ACGTGCCTGG CATTCAAGGC
GCCGCGCTCA GTGCCCGCTT GCTGCGCACG GGTGGCCAGT ATGTGAATGC GGCCAACAGC
CTGAGCATTC CGGCCTGGAC CCGAGTGGAC CTGGGCGCAC GCTACCGTTT CAAGGTCGAT
GACAAGCACG TGACATTGCG CGCCAACGTG GAGAACGTGG CGAACAAGGC GTACTGGGCT
TCGGCGTCGA CTTCCAACAA CTACTTGACC CAAGGTACGC CGAGAGTGCT GCGATTGTCG
GCCAGTGTAG ACTTCTGA
 
Protein sequence
MTPRQPYRLP FKALSLAIAM AALAPTAMAA DTTPRTYHLA AGPLADVLAR FAASAGVPLS 
FDPALLNGLQ SQGLQGNYSV PEGFTRLLAG SGYSLITTDS GGYTLAPTVD LGNALELGAT
TINSDLAASS DTWQGGQVAR SARLGVLGDQ AISDVPFSVT SYTAKTIADQ QARTLGDVLL
NDASVRQSAG FGNFSQVFTI RGLPLNTDDI SYNGLYGVLP RQIVTTEALE RVEVFKGSSA
FLNGVAPQGS GIGGAINLVP KRAEDTPTRH VTLDYATGDN IGGHLDLGTR FGEDNRFGAR
INLAQHDGGT GVDDEAQHST LVAVALDYRG ERLRLSTDLG YQKERINQGR AVIYPTGSKV
PHAPSARDNY SQAWSWSQLE DTYGMLNAEY DLNDNWMLYA GAGAKHTREN GEYSSLYVSD
ANGTARGGFL YSPHDEDNKS AVAGLNGRFA TGPVSHRVNF GLSGMWGEQR SAYEALAASK
RYDSNLYNPV KVPRPTDTYF GSDLHDPRIV GKNRNKSVAL SDTLGFLDDR VLLTVGVRRQ
SISVDSWATA TGVRNTPYDE SITTPVYGLV IKPWEHVSFY ANRIEGLAQG PTAPSSVSNA
NEVFPPKRSK QVEAGVKLDW NSFGATLGVY RIEQPNSVTY RAPGAALDTF SMDGEQVNKG
VELNLFGEPV DGLRLLTGAV FMHTEQKHTA YGSNDGNRAA GVPRFQYNLG ADWDVPGIQG
AALSARLLRT GGQYVNAANS LSIPAWTRVD LGARYRFKVD DKHVTLRANV ENVANKAYWA
SASTSNNYLT QGTPRVLRLS ASVDF