| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2780 |
|---|
| Symbol | |
|---|
| ID | 5870566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3123631 |
|---|
| End bp | 3124593 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641547898 |
|---|
| Product | anti-FecI sigma factor, FecR |
|---|
| Protein accession | YP_001669010 |
|---|
| Protein GI | 167033779 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.603267 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.262675 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCAGC GCATCGACCC ACTGATCCTT GGCGAAGCCG CTGACTGGCT GGTGCAGCTG
CAGTCGGGCA ACGCCACCGA GGACGATCGC CGTGCGGTCC AGGCCTGGTG CCAACGCAGC
GCCCAGCACG CCCAGGCGTG GCAGCGTGCC GAGGCCATCC TCGGTGATTT CCGCCGCCTG
CCCACCCCGG TTACCGGTGA AACCCTGCGC CGCCTGAGCC GCAACGGGGC GGTAAGCCGT
CGCCAGGCCC TGCAGCGCCT GGGGCTGTGG CTGCTGGCAG CACCCACGGC CTGGCTGGCC
TGGCGTGAAA CGCCTTGGCA GCAATGGACC GCCGATGCGC GCACCGCGGT CGGCGAGCAA
CGCGCATTGA CACTTGCCGA CGGTAGCCAG GTGCTGCTGA ACACCGACAC AGCCATCGAT
ATCACCTTCG ACGCCCAACA GCGCCGCATC GACCTGCTGG CGGGCGAGAT TCTGCTCACC
AGCGCCAAGG ACCCTGCCAC CCTGGCGCGG CCGCTGCTAG TGCGCACCCT GCATGGTCAG
GCGACTGCGC TGGGCACACG CTTCAGCGTG CGTATCGATG GCGCGCTGAC CCGCGTGGCC
GTACTTGAAG GCGAAGTGGC TACACGCCCG CTGCATGCCG CAAGCCTGTT GCTCAAGGCT
GGCGAGCGCA CCGCTTTCGA TGCCGACCGA GTACTGCCCG CCTCAGCGCT GGAAACCGGT
GACCTGGCCT GGGAGCACGG CATGCTGCTG GCGCGCGACA TGCGCCTGGC CGACCTGTTG
CTGGAGTTAG GTCGCTATCG CCCAGGCGTG CTGCGCTGCC ACCCGGCAGT GCGCGAGCTG
AAGGTATCGG GCGCCTTTCC ACTGGCAGAC ACCGACGCCA GCTTGCGGCT GCTGGGTGAC
ACCCTACCCG TATCAATCCA GGGTTTGACC CGTTACTGGG TGACGGTGGA GCCCCTAAGC
TGA
|
|---|
| Protein sequence | MVQRIDPLIL GEAADWLVQL QSGNATEDDR RAVQAWCQRS AQHAQAWQRA EAILGDFRRL
PTPVTGETLR RLSRNGAVSR RQALQRLGLW LLAAPTAWLA WRETPWQQWT ADARTAVGEQ
RALTLADGSQ VLLNTDTAID ITFDAQQRRI DLLAGEILLT SAKDPATLAR PLLVRTLHGQ
ATALGTRFSV RIDGALTRVA VLEGEVATRP LHAASLLLKA GERTAFDADR VLPASALETG
DLAWEHGMLL ARDMRLADLL LELGRYRPGV LRCHPAVREL KVSGAFPLAD TDASLRLLGD
TLPVSIQGLT RYWVTVEPLS
|
|---|
| |