Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2779 |
Symbol | |
ID | 5870565 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3123125 |
End bp | 3123631 |
Gene Length | 507 bp |
Protein Length | 168 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641547897 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001669009 |
Protein GI | 167033778 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.310958 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.121216 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCCCG CCGACCCTAC CCTGAACCTG CAAGTCCAGA CGCTGTACAC CGAGCACCAT GGCTGGCTGC AGGGCTGGCT GGGGCGAAAA CTGGGCAATG CCTGCGATGC CGCCGACCTG GCTCATGACA CGTTCGTGCG CCTGCTCAGC CGGCAGGGCA ACAGCTTTTT CGGCAATGAA CCCCGGGCCT TGCTGACCCA CATCGCAAAG GGCCTGGTGA TCGACCGCTG GCGCCGCCAG GAAGTCGAGC GCGCCTACCT GGAAGCCATC GCACACTTGC CGCAACCCGA GGTGCCCTCG CCGGAAACGC GCTGGCTGAT CCTCGAAACC CTGTACCGCA TCGACGCCAT GCTGCGCGAC ATGCCGGCCC GTGTACGTCA GGTGTTCCTG CTGTCGCAGC TGGACGGGCT GACCTACGCA CAAATTGCAG AACAGCTGCA GGTTTCGCTG ATCACCATCA AGCGCGACAT GCGCACGGCT TTCCTTGCCT GCCTGAGCAT CGACTGA
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Protein sequence | MPPADPTLNL QVQTLYTEHH GWLQGWLGRK LGNACDAADL AHDTFVRLLS RQGNSFFGNE PRALLTHIAK GLVIDRWRRQ EVERAYLEAI AHLPQPEVPS PETRWLILET LYRIDAMLRD MPARVRQVFL LSQLDGLTYA QIAEQLQVSL ITIKRDMRTA FLACLSID
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