| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2773 |
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| Symbol | |
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| ID | 5870559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3111368 |
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| End bp | 3115165 |
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| Gene Length | 3798 bp |
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| Protein Length | 1265 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641547891 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001669003 |
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| Protein GI | 167033772 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.276817 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.540963 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAT TACTGCGTCT GTTGAAGAGT TTCTGGGTGC TGCTGCCATT GCTGTGGCTG
GCGAGCCTGT TGATTGGCTG GCTGGTCGCG CCGCTGGTGC CGTGGCTGCG TCATCACGTA
CCTGAAGCGC TGGCCATCAT CAGTGCCTGC TTCCTGCTGG TGATCGTGCT GCGCCAGTAC
CAGCGCATCC GCGCCGAGCA CAACCTGGAG AACCTGCTGC AAATCGAAGT CGACCGCTCG
TGGAACGCCA CGGGTGAGTT CCGAGACCAA CAGGTATTGC GCGAGCGCCT GAAGCACGCC
ATCGCCATGC TGCGCACCGA TCGCTCAGCC GGTGGCGGCG GCAAGGCGGC GCTGTCCGAC
CTGCCCTGGT ACCTGGTGGT GGGCATGTCC GCTGCCGGCA AGACCTCGCT GCTGACCCAT
TCCGGTCTGT CGGCCAGCAT CGCCACGGCC AACGACAGTG AAAGCGGTAC CCAGCATTGT
GACTGGTACT TCAGCCCCGA CGCCGTAATG ATCGACACCG CCGGGCGCTA CTTGCGCGAC
GACCAGTCAG CCAGTGAGTT CTCGGCCTTC CTGCGCATGT TGCGCAAGCA ACGCGGCAAG
GCGGCGATCA ATGGCTTGGT GCTGGTGGTC AGCCTGCCCG AGCTGCTGGC GGCCAACAGC
GATGAGCGCA ATGCCCTGGC GGCGCAGCTG GTGGCACGGG TAGAAGAATA CGCCGAATGC
CTCGACGCCA ACCCGCCGGT CTACCTGATG CTGAGCAAGA CCGACCAGTT ACCGGGCTTC
AGCCAGGCAT TCGACGGCCT CGACCTGCAT GAGCGCCAGC AACCGCTGGG CATGACCTTT
GGCCTGTCGG AAATCCGCAA CAGTGGCCTG CACGCCGTGC TGCAGACGCG CCTGAAGAAC
TTGCAGGGTC ACGTTCGCCA GCACGTCGAT GCGCAGATGA TCGCCCTCGG CGCCGAGGCC
GACAGTGCGC TGTTGAACTT CCCGCAGTAC TTCGCCGCCC TCAGCGATGT ACTCGAGCAA
TTCCTCGACC ACTTCACGCG TGGCCATCGC GGCGGGACCC CGCTGCTGCT GCGTGGCCTG
TACTTCACCA GTGCGCTGCA GACCGGGCAG CAGCTGGGAC AAGTCTATGA AGACGTCATC
GCCGACGAGT TCGCCTTGCA AGCGGCCTAC GATGAGCCTG CCGAACGTGC TGGCAAGCCC
GTGGGCAACC GCAGCTACTT CATCACCGAC ACCTTCCGCC AGGTGATATT CCCGGACCGC
GACCTGACCT TGTACCAGTC ACGCCTGGGC CGGCAGGCCA CGTTCAGCCC GCTGTTACTG
GGCCTGGCCG TTGCCACGGG TGTCCTGTTC ATCGGCTGGC AGGCATTGTC GTTCATCAAC
AACCGGCAGT GGCTCGATGG CTTGCGCGGG CAACTGGCGC AGATCGAACA TGCGCAGGAT
CGCGAGCAAC TGCTGGCCGC AGGCAAGGGC CTGGAAGTGC TGCGCGGACA GATGGCGGTA
GTCGAAGCCC ATCGCCTGCA AGGCGTCCCC CTGCTGTTGG CTGCTGGCCT TTACCACGGT
GAAGCAGTCC ATCAGGTGAG CAGTGCCGCA TACCTGGCGC AATTGCGCAG CCAGGCGCTT
GAGCCGATCA CCCGCAGCCT GCAAGTGCAG ATGCGCGCGT TCAACACATT CGCCAACGGC
ATCAACCAGG AACTGGAGTT CACCCCAGCG CCGCTGCCTA AAAAACGCAA CGGCAAGCCT
CTCGCCCCTG CCTTGGCCGC CAAGGCCACA GCAGCCAACA CCCGCCTGGG TGGCTACGCC
GCCAAGGTCA ACCTGGCCAC CGCCAGCGAT GCCGCCGAGC TGTCCGCCAC CACCGGTGGC
CTGTCGTTGT CCGAAGAAAT GCTCGGCCGA CTTGACGAAC AGCAGGTGGC CTCGATCATC
GACGCCTACA ACACGCTCAA GATGTACCTG CTGCTGACCG AGCCCCAGAT ACATCCAGAT
CCGGCCTTCG TCGCTGCCAG CCTGCCCCAG GCCTGGACAG GTGCAGCCGC TGAAGGGGCC
CCGGCCGACG CCGGGGTAAT CGAAGAAAAC GCACCGCTTT ACGTGCAGTT GCTGGAGCAA
GGCCAGGCGC CGGCACTGCC GCGCAACGAG CAACTTATCG ACGAGACCCG GCAGAACCTC
AAGGCATTCA TGATCTCCAG CTCGCTGGTC GATCGTGAAT ACCTGCGCCT GCAACTTGAG
TCGAGCCGCC AGTTCCCGAC GTTGAGCCTC AACGACCTGG TGCCGCAACC GGGCCGTGCG
CTGCTGTACG GGTCCGCTGG CGTGCCAGCA ATCTACACGC GCCAGGGCTG GGACACCTTC
GTCAAGCCCG AACTGATCAA GCTGGTGTCG GGCAACCTGC GCAACGAGTC GGACTGGGTG
CTGGACGGTG AAGGCGGCGA CGCGCTCGTG CAAAAAGCCA ACTTCGTGCG CGAGTTCATG
ACCCGCTACA AGCGCGACTA CACCCAGGCC TGGTACAAGA TGGTCAGCAG CGTCGGTGTG
CGCCACTTCA CCGACCTGGC CTCGGCCACC GAGCAACTGG GCCTGCTCAG TGACGTGCAG
AACTCGCCTG TGAAAAACCT GCTGGCGGCG GTCAATGACA ACACCCAGTG GGACCTGCCG
ACCAAGCACG CGATCCCGGC CCCTGGCGCC GCCCGCGATG ACGGTTTCTG GAGCAAGGTC
ACAGGCTTGT TCGACACCGA GAACGCCCTG CCCACCAGCG TCGCCCCGGC CCTGCCGGCG
GTGGACGATG GCAGCCTGGC CAAACGTTTC GAGCCGGTGG CGCGAGTGTT TGCGCAAAAC
AACGCCGAAG GCGCCGACAG CACCATCATG GACCGCTACC TGGCCGCCTT GCGCAAGCTC
AAGGTACGCA TGAACAACAT CCAGCGTTCG CAGGATGTGG GCAAAAGCAG CAAGCAGCTG
ATCAGCGAAA CCTTGGAAGG CCAGCCAAGC GAAGTCACCA CCGTACGCAA CTATGTGGAG
AGCAGCGTCG ACACCAGCCA GGACGGCTTG TCCCGCTCAC TGCAGGGGCT GTTCAGCCTG
CCCATCCAAT ACGCCTGGGC GGCCCTGCGT GACCCGGCCG GCCAGCAGAT CGCCAAGGCC
TGGGCGCAAC AGATTGCCAA ACCGTGGGAA CAGGTCATGG CGCACCGTTA CCCGATTGCC
GGCGGCAGCA ACAATGAAGC GTCGGTGAAA GACCTGCAAC GCTTCGTCGA CCCGGACAGC
GGCCTGCTGC CCGCCTTCAA ACGTAACGAA ATCGGCAACC TGGCCGGCGG TGAGGGCCTG
GGTGTGGGCG ACAGCAAGGG GCCAGCGCTG GTCAACCCTG GCATGCTCAA CAGCATCGAC
AAGGCCAGCT CGGTGGGCCA GGTGATTGCC AGCCTGTCTG ACCGTGACAA CGGCTTCGAG
ATCATGCTGG AGCCGTCGGC CAACTTCACC GACATCGTGT TCACCCTCGA CGGCCAGGAG
CAGCACTACC GCAACGGCCG TAGCAGCTGG AACCGCTTCG CCTGGCCGGG CACCAGCAAC
GCACCTGGCG CACGCCTGGA CGTAGTGACC CTGAGCGGTG CGCGGGTGAC CGTGTTCGAC
TTCCCGGGGC GCTGGGGCTT GCTGCGTATG AACGAAAGCG CCCGCGTAGA CGACCTGGAT
GGCATTCAGC AACGCTTCAG CTGGAACACC GCCAGTGGTC GCGTGAGCCT TGTGGTGCGC
AACTTTGGCG GGGTCAAGCT GACCGACCTA GGTGACGTCA AGGCGCTGAG CGCCCTGAAC
GACAGGGGCG GCCAATGA
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| Protein sequence | MKTLLRLLKS FWVLLPLLWL ASLLIGWLVA PLVPWLRHHV PEALAIISAC FLLVIVLRQY
QRIRAEHNLE NLLQIEVDRS WNATGEFRDQ QVLRERLKHA IAMLRTDRSA GGGGKAALSD
LPWYLVVGMS AAGKTSLLTH SGLSASIATA NDSESGTQHC DWYFSPDAVM IDTAGRYLRD
DQSASEFSAF LRMLRKQRGK AAINGLVLVV SLPELLAANS DERNALAAQL VARVEEYAEC
LDANPPVYLM LSKTDQLPGF SQAFDGLDLH ERQQPLGMTF GLSEIRNSGL HAVLQTRLKN
LQGHVRQHVD AQMIALGAEA DSALLNFPQY FAALSDVLEQ FLDHFTRGHR GGTPLLLRGL
YFTSALQTGQ QLGQVYEDVI ADEFALQAAY DEPAERAGKP VGNRSYFITD TFRQVIFPDR
DLTLYQSRLG RQATFSPLLL GLAVATGVLF IGWQALSFIN NRQWLDGLRG QLAQIEHAQD
REQLLAAGKG LEVLRGQMAV VEAHRLQGVP LLLAAGLYHG EAVHQVSSAA YLAQLRSQAL
EPITRSLQVQ MRAFNTFANG INQELEFTPA PLPKKRNGKP LAPALAAKAT AANTRLGGYA
AKVNLATASD AAELSATTGG LSLSEEMLGR LDEQQVASII DAYNTLKMYL LLTEPQIHPD
PAFVAASLPQ AWTGAAAEGA PADAGVIEEN APLYVQLLEQ GQAPALPRNE QLIDETRQNL
KAFMISSSLV DREYLRLQLE SSRQFPTLSL NDLVPQPGRA LLYGSAGVPA IYTRQGWDTF
VKPELIKLVS GNLRNESDWV LDGEGGDALV QKANFVREFM TRYKRDYTQA WYKMVSSVGV
RHFTDLASAT EQLGLLSDVQ NSPVKNLLAA VNDNTQWDLP TKHAIPAPGA ARDDGFWSKV
TGLFDTENAL PTSVAPALPA VDDGSLAKRF EPVARVFAQN NAEGADSTIM DRYLAALRKL
KVRMNNIQRS QDVGKSSKQL ISETLEGQPS EVTTVRNYVE SSVDTSQDGL SRSLQGLFSL
PIQYAWAALR DPAGQQIAKA WAQQIAKPWE QVMAHRYPIA GGSNNEASVK DLQRFVDPDS
GLLPAFKRNE IGNLAGGEGL GVGDSKGPAL VNPGMLNSID KASSVGQVIA SLSDRDNGFE
IMLEPSANFT DIVFTLDGQE QHYRNGRSSW NRFAWPGTSN APGARLDVVT LSGARVTVFD
FPGRWGLLRM NESARVDDLD GIQQRFSWNT ASGRVSLVVR NFGGVKLTDL GDVKALSALN
DRGGQ
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