| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2771 |
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| Symbol | |
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| ID | 5870557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3109281 |
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| End bp | 3110624 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641547889 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001669001 |
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| Protein GI | 167033770 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.171251 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.625099 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGC AGAGCCGGGT GATGTGGTCG GAAGGCATGT TCCTGCTGCC CCAGCACTTC
CAGTACCAGG ACGAGTTCCA CCAGCACCAG TTGGCTGAGG CGACCCTGCG CAGTACTCCT
TTCCATTGGG GTGTACAGGC GCTGCAGGTG GACGAAGACG CCCTGGCCAA CGGTTCGCTG
CAGCTCAAGC GCCTGAAGCT GGTGTTCCCT GATGGCAGCC TGTACGACGC TCCGCAGCAC
GATCCGCTGC CGGCCGCGCG TGACCTCAAG GACCTGCTCA AGGCCAACGA CCTGAAGGTT
TATGCCGCGC TCAAGCTGCC CGAGCCATTC GGCCTCAATT ACGTCGAGGA TGGCCACGAG
CACAAGGCCG CACGGCGCTT TCGCAAGCAG TTCGACACCC TGCCCGACCT TAATGAAGGT
GAGCTGGAGA ACGAGATCAC CAGCCTGCGC CTGAACGTGG TCATGCTGGT CGACGGCGAC
AGCCTCGATG GCTACAGCTA CTGCCCGCTG GCGAAGCTGA CACGCAACAG CATGGGCGGC
TTCAACCTCG ACCCGCATTT CGTCCACCCT ACCCTGCACC TGGGCAGCCA CGAAACCATC
ACCAGCCTCG GCAAACGCCT GCTCGGTGCC CTGCAGGCCA AGAGCAAGGC GCTGTCCGGC
CGACGCCGCG AGCGCGCCGA CCAGATCGCC GAGTTCGGCT CCAGCGACGT CACCTTGTTC
TGGCTGTTGA ACACGGTCAA CCGTGCCCAC CCGCAATTGG CGCATCTGCT GGCCCATCCG
CGCCTGCACC CGGAGCGCCT GTACCTGTTC CTCGCCGACC TGGCCGGCGG GCTCCTGACC
TTCACCCTGG ACACCCAGCT CAGCGACATC CCCGAGTACG ACCACCAGGA CCCTGCGGCA
TCGCTGGTGA AACTGGACGA AATGATCCGC GTAATGCTCG ACAACGTGGT GCCCAACCAG
TGCATCGTCA TCAACCTGAC CCAGACCAAA CCGTCCCATT GGCAAGGCCA GCTGCACGAC
CCACGCCTGG CCGAAGCCGA CTTCTATATT GCCGTGCACG CCGACATGCC CGGTGCCAGC
CTGCTGGAAC TGGTGCCCCG AGCGTTCAAG GTCGGCTCGC CGGAAGACAT CGAGGTGGTG
GTCAACAGCG CCATGCCTGG CGTCACCCTC AATCATGCCG CGCGGTTACC GAACGCGATT
CCGGTGCGCC TGGATAACCA GTATTTCGCC ATCGAGCCGC ACGGCACTGT GTATGAGCGA
ATGATCAATG CCCAGGCCAT CTGCTTCTAT GCGCCCAGCG CCTTTACCAA CCTCAAGCTT
GAACTGATGG CGGTGCTCAA ATGA
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| Protein sequence | MSKQSRVMWS EGMFLLPQHF QYQDEFHQHQ LAEATLRSTP FHWGVQALQV DEDALANGSL
QLKRLKLVFP DGSLYDAPQH DPLPAARDLK DLLKANDLKV YAALKLPEPF GLNYVEDGHE
HKAARRFRKQ FDTLPDLNEG ELENEITSLR LNVVMLVDGD SLDGYSYCPL AKLTRNSMGG
FNLDPHFVHP TLHLGSHETI TSLGKRLLGA LQAKSKALSG RRRERADQIA EFGSSDVTLF
WLLNTVNRAH PQLAHLLAHP RLHPERLYLF LADLAGGLLT FTLDTQLSDI PEYDHQDPAA
SLVKLDEMIR VMLDNVVPNQ CIVINLTQTK PSHWQGQLHD PRLAEADFYI AVHADMPGAS
LLELVPRAFK VGSPEDIEVV VNSAMPGVTL NHAARLPNAI PVRLDNQYFA IEPHGTVYER
MINAQAICFY APSAFTNLKL ELMAVLK
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