| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2768 |
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| Symbol | |
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| ID | 5870554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3104873 |
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| End bp | 3105943 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641547886 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001668998 |
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| Protein GI | 167033767 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.0620169 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.565386 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGCA CGCACTGGCG ATCAGCCCCT GGTCTGATCG ATCAGGCCCG AGCCGAGCCG
CACCGATTCG AATTCTTTCA ATTGGTGCGC CTGCTCCGCC TGCACTACAG CCGCACCGGT
CGCATGGACC TGGCAACCCG GCCCCATGAA GACCCGCTGC GTTTCCGCAC CCAGTTGTCG
CTAGCATTTC CGGCCAGCGA GGTCAGCGAC CTGCACTTTG AGCGCGAAGG CAAGCTATCG
CCGGCTGGCC TGCCACTGTC GGAAGTGCAG GTTACCTTCA TGGGCCTGGT CGGGCCGTCG
GGCGTGCTGC CGCGCCCGTA TACCGAGTTG CTGCTCGAGC GCCATGTGCA ATACCGCGAC
GATGCCGCCC ATGCGTTTCT CGACATCTTC TCGCACCGTA TGACCACGCT GTTCTACGAG
GCCTGGCAAA AATACAAGTT CCATATCGAG CACGAGCGCA ATGGCACCTC GGGTTTCGAT
GGCTACCTGC TCAACCTGGC GGGCTTCGGG CCGCGCGCGC AAAAACTGAA GTTCGAAGAA
CAACCGTCAG TATTGCGTCG TGAGCTGTTC AGCTATTTTG CCGGCCTGCT CAGCCAGAAG
CCGCGCAATG CGCTGAACCT CGAACGGATG CTCGGCTTCT ATTTCTCGTT GCCGATCCAC
GTCAAGCAGT TCGCCGGTCG TTGGTTGCAC CTGCCGCCTG AACAGCGCAC CCAGCTTGGG
CGGCGCAACG CCCAGCTCGG CCAAAGCGCC GTAGCGGGCA AGCGAACCTG GGATTACCAA
TCGTGCATTC GCATCGAGCT GGGCCCACTG AGCCTGGCCG ATTACCAGCG TTTTCAGCCG
GGCACCGAGT GCTATCGCAA GCTGGTCGAG TTGGTGCGCT TCTATATAGG TGCCGGGCTG
GACTTCGAAA TCGCCCCGCG CCTCAAGCGC GAGGCAGTGC CACGCGCCCA GCTCGGCCGC
AAAGGCAATG TCGCCTTGGG CTGGCTGGGC TGGCTCAAAC GCCCTGGCCG TGACGCGGAG
CCTTCGCGTT GCGCCGTTTT CCACATTCCT TACGATGGGG TCGCCTTGTG A
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| Protein sequence | MASTHWRSAP GLIDQARAEP HRFEFFQLVR LLRLHYSRTG RMDLATRPHE DPLRFRTQLS
LAFPASEVSD LHFEREGKLS PAGLPLSEVQ VTFMGLVGPS GVLPRPYTEL LLERHVQYRD
DAAHAFLDIF SHRMTTLFYE AWQKYKFHIE HERNGTSGFD GYLLNLAGFG PRAQKLKFEE
QPSVLRRELF SYFAGLLSQK PRNALNLERM LGFYFSLPIH VKQFAGRWLH LPPEQRTQLG
RRNAQLGQSA VAGKRTWDYQ SCIRIELGPL SLADYQRFQP GTECYRKLVE LVRFYIGAGL
DFEIAPRLKR EAVPRAQLGR KGNVALGWLG WLKRPGRDAE PSRCAVFHIP YDGVAL
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