| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2751 |
|---|
| Symbol | |
|---|
| ID | 5870539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3084834 |
|---|
| End bp | 3086291 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641547872 |
|---|
| Product | amidase |
|---|
| Protein accession | YP_001668984 |
|---|
| Protein GI | 167033753 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.306922 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCCGC TAGCCATCGA CCCCATCGTT GCCCTCGATG CAGAGGCATT GTCCCAGGCC
ATTCATGGCG GCCAGCTGTC GTGCCGGGAG GTGATGCAGG CTTACCTTGC GCATATCGAA
CGCTTCAACC CGCAGGTCAA TGCGCTGGTA TCGCTGCGCC CGGCCGAGGT GCTGCTGGCC
GAGGCCGACG AGCGCGACCG CGAACGTGCC CGTGGCCACT CGCGCGGCTG GATGCATGGC
ATGCCGCAGG CGATCAAGGA CCTGGCCGCC ACCGCCGGGC TGCGCACCAC CCTGGGTTCG
CCGCTGTTCG CCGAGCAGGT GCCCGAGCAG GATGCGATCA GCGTGGCGCG GGTGCGGGCT
AGCGGGGCGC TGATCGTGGG CAAGAGCAAC GTGCCTGAGT TCGGCCTCGG CTCGCAAACC
TACAACAGCC TGTTTGGCAC CACTACCAAT GCCTACGACT CAGGGCGGGT GGCCGGTGGC
AGCAGCGGCG GGGCGGCTGC GGCACTGGCC ATGCGCTTGC TGCCGGTGGC CGACGGCAGC
GACATGATGG GCTCGCTGCG CAACCCGGCG GCGTTCAACA ACGTGTTCGG CCTGCGCCCG
TCACAAGGCC GGGTGCCGCA TGGGCCGGCG CCGGAGTTGT TCGTGCAGCA GCTGGCCACC
GAGGGGCCGA TGGGCCGCAG TGTGGTCGAT GTAGCGCGGT TGTTGTCGAT ACAGGCTGGC
GTCGACGCGC GGGTGCCGCT GTCGTTAAGC GAAGGCCGGC GCGATTTCAC CGACGCCTTG
CAGCGCGACT TCCGAGGTGT GCGGGTCGGC TGGCTGGGCG ACTACAACGG TTACCTGCCG
ATGGATGACG GGGTGATGAG CCTGTGCGAG TCGGCGCTGG CCGACTTTGC CGAACTGGGC
TGCCAGGTCG AGGCCTGCCA GCCGGCATTC GACCTGGCAC GCTTGTGGCA ATGCTGGCTG
AGCCATCGCC ACTTCCTGGT GCACGGCAAC CTCGGCGCGG CCTATGCCGA CCCAGCCAAG
CGCGCACTGC TCAAGCCCGA AGCCCAGTGG GAGGTAGAAG GTGGCTTGCA GATGAGTGCG
GCGGCGCTGT ACCAGGCCTC GTTGGACCGC AGCGATTGGT ACCGCGCCTT GGCCAAGCTG
TTCGAACGTT ACGATTTCCT GCTGTTGCCC TCGGCCCAGG TGTTCCCTTT CGATGCACGC
CAGCCATGGC CGACGGCGGT CGGCGGGCGG GCGATGGACA CCTATCACCG TTGGATGGAG
GTGGTGATCG GGCCAACCCT GGCCGGCTTG CCGAGCATCA GCGTGCCGGT CGGGTTCAAT
GCTGGCGGCC TGCCCATGGG CCTGCAGATC ATAGGCCCGG CGCAGGCGGA CCATGCCGTG
TTGCAGCTGG CATATGCCCA TGAGCAGCTC ACCCGCTGGG TGCAGCGTTG CCCGCCACAA
TGCCTGCAGG GTTCATGA
|
|---|
| Protein sequence | MKPLAIDPIV ALDAEALSQA IHGGQLSCRE VMQAYLAHIE RFNPQVNALV SLRPAEVLLA
EADERDRERA RGHSRGWMHG MPQAIKDLAA TAGLRTTLGS PLFAEQVPEQ DAISVARVRA
SGALIVGKSN VPEFGLGSQT YNSLFGTTTN AYDSGRVAGG SSGGAAAALA MRLLPVADGS
DMMGSLRNPA AFNNVFGLRP SQGRVPHGPA PELFVQQLAT EGPMGRSVVD VARLLSIQAG
VDARVPLSLS EGRRDFTDAL QRDFRGVRVG WLGDYNGYLP MDDGVMSLCE SALADFAELG
CQVEACQPAF DLARLWQCWL SHRHFLVHGN LGAAYADPAK RALLKPEAQW EVEGGLQMSA
AALYQASLDR SDWYRALAKL FERYDFLLLP SAQVFPFDAR QPWPTAVGGR AMDTYHRWME
VVIGPTLAGL PSISVPVGFN AGGLPMGLQI IGPAQADHAV LQLAYAHEQL TRWVQRCPPQ
CLQGS
|
|---|
| |